RNAstructure: web servers for RNA secondary structure prediction and analysis
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Summary
The web server offers RNA secondary structure prediction, including free energy minimization, maximum expected accuracy structure prediction and pseudoknot prediction, and can predict secondary structures conserved in either two homologicals or more than two homologs.
- Type
- article
- Published
- 2013-04-24
- Cited by
- 387
- References
- 43
- Access
- Open access
- OpenAlex
- https://openalex.org/W2039746015
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:6086121
Keywords
Pseudoknot, Web server, Protein secondary structure, Biology, RNA
References
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- Fundamental differences in the equilibrium considerations for siRNA and antisense oligodeoxynucleotide design
- Dynalign: an algorithm for finding the secondary structure common to two RNA sequences.
- The expanding snoRNA world.
- The promises and pitfalls of RNA-interference-based therapeutics
- lncRNAs transactivate Staufen1-mediated mRNA decay by duplexing with 3'UTRs via Alu elements
- RNA as a target for small molecules.
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- 3D-NuS: A Web Server for Automated Modeling and Visualization of Non-Canonical 3-Dimensional Nucleic Acid Structures.
- Intron-containing algal transgenes mediate efficient recombinant gene expression in the green microalga Chlamydomonas reinhardtii
- The NT11, a novel fusion tag for enhancing protein expression in Escherichia coli
- Potentiating anti-tumor immunity using aptamer-siRNA conjugates
- EpCAM Aptamer-siRNA Chimera Targets and Regress Epithelial Cancer
- Elucidation of the structures of all members of the Avsunviroidae family.
- The RNA recognition motif of NIFK is required for rRNA maturation during cell cycle progression
- Secondary structure of expansion segment D1 in LSU rDNA from Arachnida and its phylogenetic application in Eriophyoid mites and in Acari.
- An in solution assay for interrogation of affinity and rational minimer design for small molecule-binding aptamers.
- The Role of Structural Elements of the 5'-Terminal Region of p53 mRNA in Translation under Stress Conditions Assayed by the Antisense Oligonucleotide Approach
- Kinetics of cisplatin binding to short r(GG) containing miRNA mimics - influence of Na(+)versus K(+), temperature and hydrophobicity on reactivity.
- Improved prediction of RNA secondary structure by integrating the free energy model with restraints derived from experimental probing data
- Shotgun assembly of the assassin bug Brontostoma colossus mitochondrial genome (Heteroptera, Reduviidae).
- A nucleotide-level coarse-grained model of RNA.
- Progress and outlook in structural biology of large viral RNAs
- A hairpin within YAP mRNA 3'UTR functions in regulation at post-transcription level.
- Determination of in vivo RNA structure in low-abundance transcripts
- Discovery of a Biomarker and Lead Small Molecules to Target r(GGGGCC)-Associated Defects in c9FTD/ALS
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