KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases
Explore this paper's citation graph
Summary
A web server, KOBAS 2.0, is reported, which annotates an input set of genes with putative pathways and disease relationships based on mapping to genes with known annotations, which allows for both ID mapping and cross-species sequence similarity mapping.
- Type
- article
- Published
- 2011-06-27
- Cited by
- 4,400
- References
- 44
- Access
- Open access
- OpenAlex
- https://openalex.org/W2027847170
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:2454002
Keywords
Biology, Annotation, Identification (biology), Web server, Computational biology
References
- Genetic association database
- THE CONTROL OF THE FALSE DISCOVERY RATE IN MULTIPLE TESTING UNDER DEPENDENCY
- Clustering Biological Annotations and Gene Expression Data to Identify Putatively Co-regulated Biological Processes
- WebGestalt: an integrated system for exploring gene sets in various biological contexts
- Ensembl Genomes: Extending Ensembl across the taxonomic space
- GeneTrail—advanced gene set enrichment analysis
- Reactome knowledgebase of human biological pathways and processes
- Reactome: a database of reactions, pathways and biological processes
- Aging-Related Gene Expression in Hippocampus Proper compared to Dentate Gyrus is Selectively Associated with Metabolic Syndrome Variables in Rhesus Monkeys
- Functional annotations in bacterial genomes based on small RNA signatures
- ArrayXPath II: mapping and visualizing microarray gene-expression data with biomedical ontologies and integrated biological pathway resources using Scalable Vector Graphics
- KOBAS server: a web-based platform for automated annotation and pathway identification
- GFINDer: Genome Function INtegrated Discoverer through dynamic annotation, statistical analysis, and mining
- More synergetic cooperation of Yamanaka factors in induced pluripotent stem cells than in embryonic stem cells
- PANTHER: a library of protein families and subfamilies indexed by function.
- Gene Ontology: tool for the unification of biology
- GENECODIS: a web-based tool for finding significant concurrent annotations in gene lists
- Automated genome annotation and pathway identification using the KEGG Orthology (KO) as a controlled vocabulary
- A direct approach to false discovery rates
- GenMAPP 2: new features and resources for pathway analysis
Cited by
- Protannotator: a semiautomated pipeline for chromosome-wise functional annotation of the "missing" human proteome.
- Critical Genomic Networks and Vasoreactive Variants in Idiopathic Pulmonary Arterial Hypertension.
- Identification of 2-oxohistidine Interacting Proteins Using E. coli Proteome Chips*
- Multi-omics analysis reveals regulators of the response to PDGF-BB treatment in pulmonary artery smooth muscle cells
- Identification of microRNAs regulating Escherichia coli F18 infection in Meishan weaned piglets
- Comparative interactomics for virus–human protein–protein interactions: DNA viruses versus RNA viruses
- Understanding the mechanisms of dormancy in an invasive alien Sycamore lace bug, Corythucha ciliata through transcript and metabolite profiling
- Associations among dietary non-fiber carbohydrate, ruminal microbiota and epithelium G-protein-coupled receptor, and histone deacetylase regulations in goats
- Raineya orbicola gen. nov., sp. nov. a slightly thermophilic bacterium of the phylum Bacteroidetes and the description of Raineyaceae fam. nov.
- Transcriptome Analysis of a Premature Leaf Senescence Mutant of Common Wheat (Triticum aestivum L.)
- Circular RNAs are differentially expressed in liver ischemia/reperfusion injury model
- The UbL-UBA Ubiquilin4 protein functions as a tumor suppressor in gastric cancer by p53-dependent and p53-independent regulation of p21
- MicroRNA Expression Analysis of Naked Silkworms.
- Global identification of circular RNAs in chronic myeloid leukemia reveals hsa_circ_0080145 regulates cell proliferation by sponging miR-29b.
- Genome-wide analysis of long noncoding RNA and mRNA profiles in PRRSV-infected porcine alveolar macrophages.
- Identification of a novel anthocyanin synthesis pathway in the fungus Aspergillus sydowii H-1
- Attenuation of Antiviral Immune Response Caused by Perturbation of TRIM25-Mediated RIG-I Activation under Simulated Microgravity.
- Sinomenine Inhibits the Growth of Ovarian Cancer Cells Through the Suppression of Mitosis by Down-Regulating the Expression and the Activity of CDK1
- Understanding the role of RNA-silencing mediated processes in inter-specific hybridisation and origin of Cucumber mosaic virus satellite RNAs
- Directed multistep biocatalysis using tailored permeabilized cells.
Related papers
- On the Important Content Characters about Annotation of Xiaojing by Tang Xuan_zong
- Social Filtering 환경에서 사용자 관심사를 고려한 Annotation 디스플레이 설계 및 구현
- Annotation of Li Shan WenXuan——One Annotation Phenomenon Which is Poles Apart with China Classics Annotation
- 다중 사용자 환경에서 Annotation 인터페이스의 설계 및 구현
- A Review of Annotation of the Pedagogic Colen Corpus
- On the Annotation of Ruan Ji's Poetry
- Edge detection and ViT-based segmentation Model Auto Annotation Process
- 펜 입력 장치 환경을 고려한 컨텍스트 기반 Annotation
- Quality and Efficiency of Manual Annotation: Pre-annotation Bias