WebGestalt: an integrated system for exploring gene sets in various biological contexts

Keywords

Biology, Upload, Set (abstract data type), Gene, Gene nomenclature

References

• MAPPFinder: using Gene Ontology and GenMAPP to create a global gene-expression profile from microarray dataPeter F. Lorber — 2003
• Evidence for large domains of similarly expressed genes in the Drosophila genomePaul T. Spellman, Gerald M. Rubin — 2002
• Global functional profiling of gene expression.Sorin Drăghici, Purvesh Khatri, Rui Pires Martins — 2003
• GeneKeyDB: A lightweight, gene-centric, relational database to support data mining environmentsSA Kirov, Xinxia Peng, Erich J. Baker — 2005
• Genome-scale analysis of positional clustering of mouse testis-specific genesQuan Li, Bernett T. K. Lee, Louxin Zhang — 2005
• WebQTL: rapid exploratory analysis of gene expression and genetic networks for brain and behaviorElissa J. Chesler, Lu Lu, Jintao Wang — 2004
• Information Visualization Techniques in Bioinformatics during the Postgenomic Era.Ying Tao, Yang Liu, Carol Friedman — 2004
• A computational analysis of whole-genome expression data reveals chromosomal domains of gene expressionBarak A. Cohen, Robi D. Mitra, Jason D. Hughes — 2000
• The human transcriptome map: Clustering of highly expressed genes in chromosomal domains. Caron H, ∗ van Schaik B, van der Mee M, et al. Science 2001;291:1289–1292.Thomas J. Liesegang — 2001
• Use of keyword hierarchies to interpret gene expression patternsDaniel R. Masys, John Welsh, J. Lynn Fink — 2001
• GFINDer: Genome Function INtegrated Discoverer through dynamic annotation, statistical analysis, and miningMarco Masseroli, D Martucci, Francesco Pinciroli — 2004
• Probing the Gene eXpression Database for candidate genesMaurice A. M. Van Steensel, Jacopo Celli, JH van Bokhoven — 1999
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• Principles of Data MiningDavid J. Hand — 2001
• SOURCE: a unified genomic resource of functional annotations, ontologies, and gene expression dataMaximilian Diehn — 2003
• The Human Transcriptome Map: Clustering of Highly Expressed Genes in Chromosomal DomainsHuib N. Caron, Barbera D. C. van Schaik, M. van der Mee — 2001
• Gene Ontology: tool for the unification of biologyMichael Ashburner, Catherine A. Ball, Judith A. Blake — 2000
• The Cancer Genome Anatomy Project: new resources for reading the molecular signatures of cancerRobert L. Strausberg — 2001
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• ChipInfo: software for extracting gene annotation and gene ontology information for microarray analysisShan Zhong — 2003

Cited by

• Designing, performing, and interpreting a microarray-based gene expression study.Giovanni Coppola — 2011
• Reduced Representation Bisulfite Sequencing of Human Neutrophils Reveals Widespread Inter-Individual Epigenetic VariationAniruddha Chatterjee — 2013
• Proteomics of transformed lymphocytes from a family with familial pulmonary arterial hypertension.Alexei Zhidkov, V. S. Marchenko — 2008
• Experimental anti‐angiogenesis causes upregulation of genes associated with poor survival in glioblastomaAngela Maria Girelli Bocci — 2007
• Gene expression profiling of peripheral T-cell lymphoma including gammadelta T-cell lymphoma.Julio García Lanza — 2009
• Novel recognition motifs and biological functions of the RNA-binding protein HuD revealed by genome-wide identification of its targetsDaniel Toscani Giménez — 2009
• Exploring schizophrenia drug-gene interactions through molecular network and pathway modeling.Daniel K. Putnam, Jingchun Sun, Zhongming Zhao — 2011
• DTome: a web-based tool for drug-target interactome constructionElham Bagheri — 2012
• Molecular Phenotyping of Immune Cells from Young NOD Mice Reveals Abnormal Metabolic Pathways in the Early Induction Phase of Autoimmune Diabetes大輔 三浦 — 2012
• Meta-Analysis of Gene Expression Signatures Defining the Epithelial to Mesenchymal Transition during Cancer ProgressionTatiana Kustodieva — 2012
• Finding trans-regulatory genes and protein complexes modulating meiotic recombination hotspots of human, mouse and yeastManuel Peláez del Rosal — 2014
• The selective impact of transgenically expressed glucocorticoid receptor on T cellsB. A. McGregor, R. C. Couchman — 2015
• Transcriptomics of the late gestation ovine fetal brain: modeling the co-expression of immune marker genesMaría Belén Rabaglino, Maureen Keller‐Wood, Charles E. Wood — 2014
• Post-Transcriptional Regulation of Renalase Gene by miR-29 and miR-146 MicroRNAs: Implications for Cardiometabolic Disorders.Barbara Pezzini — 2015
• Large-scale RNA-Seq Transcriptome Analysis of 4043 Cancers and 548 Normal Tissue Controls across 12 TCGA Cancer Types泰久 太田 — 2015
• Critical Genomic Networks and Vasoreactive Variants in Idiopathic Pulmonary Arterial Hypertension.石丸博明 — 2016
• Comparison of the Proteome of Adult and Cord Erythroid Cells, and Changes in the Proteome Following Reticulocyte Maturation*Dionne J. Jones, Betty Collier Watson — 2016
• High-resolution arrays reveal burden of copy number variations on Parkinson disease genes associated with increased disease risk in random cohortsGed Keilty — 2016
• A human neurodevelopmental model for Williams syndromeGeon-Young Kim, Yong‐Kwon Koh, Byoung‐Young Choi — 2016
• Filtrating colorectal cancer associated genes by integrated analyses of global DNA methylation and hydroxymethylation in cancer and normal tissueLars Huldén — 2016

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