Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw
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Summary
Deep metagenomic sequencing is used to determine the impact of thaw on microbial phylogenetic and functional genes, and relate these data to measurements of methane emissions, and construct the first draft genome from a complex soil metagenome, which corresponds to a novel methanogen.
- Type
- article
- Published
- 2011-11-06
- Cited by
- 692
- References
- 45
- Access
- Open access
- OpenAlex
- https://openalex.org/W2027496182
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:4381906
Keywords
Permafrost, Metagenomics, Methanogen, Microbial population biology, Methane
References
- Climate change. Permafrost and the global carbon budget.
- Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates.
- Variation in methane production pathways associated with permafrost decomposition in collapse scar bogs of Alberta, Canada
- Biogeochemistry of methane and methanogenic archaea in permafrost.
- Soil organic carbon pools in the northern circumpolar permafrost region
- Amplification of complex gene libraries by emulsion PCR
- Metagenomic Discovery of Biomass-Degrading Genes and Genomes from Cow Rumen
- Characteristics of the recent warming of permafrost in Alaska
- Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB
- Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples
- Microbial diversity and activity through a permafrost/ground ice core profile from the Canadian high Arctic.
- Fast UniFrac: Facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data
- Nitrogen fixation by a methanogenic archaebacterium
- Basic local alignment search tool.
- Bacterial Community Dynamics across a Floristic Gradient in a Temperate Upland Grassland Ecosystem
- SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
- Viability, diversity and composition of the bacterial community in a high Arctic permafrost soil from Spitsbergen, Northern Norway.
- FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix
- Controlling the false discovery rate: a practical and powerful approach to multiple testing
- Aerobic methanotrophic bacteria of cold ecosystems.
Cited by
- Microbiology: The life beneath our feet
- Methane oxidation coupled to nitrate reduction under hypoxia by the Gammaproteobacterium Methylomonas denitrificans, sp. nov. type strain FJG1.
- Landscape topography structures the soil microbiome in arctic polygonal tundra
- Temperature sensitivity of gaseous elemental mercury in the active layer of the Qinghai-Tibet Plateau permafrost.
- Comparative analysis of shotgun metagenomics and 16S rDNA sequencing of gut microbiota in migratory seagulls
- Some Clustering and Classification Problems in High-Throughput Metagenomics and Cheminformatics
- Accuracy of Next Generation Sequencing Platforms
- Methylotrophs in natural habitats: current insights through metagenomics
- Microbial communities and metabolic networks in Arctic peatlands
- Diversity and functions of bacterial community in drinking water biofilms revealed by high-throughput sequencing
- A Metagenomic Analysis of Ancient Sedimentary DNA Across the Pleistocene-Holocene Transition
- Identification of Environmental Alphaproteobacteria with Conserved Signature Proteins in Metagenomic Datasets
- Capturing prokaryotic dark matter genomes.
- Carbon and nitrogen mineralization in temperate forest soils at low temperatures
- Back to Earth: Molecular Approaches to Microbial Ecology Must Consider Soil Morphology and Physicochemical Properties
- Geomicrobial characterisation of a 60 m long permafrost core, taken over a future CO2 storage site at Svalbard
- Arctic soil microbial diversity in a changing world.
- Refining the phylum Chlorobi by resolving the phylogeny and metabolic potential of the representative of a deeply branching, uncultivated lineage
- Proceedings of the Eleventh Annual UT-ORNL-KBRIN Bioinformatics Summit 2012
- Statistical models for large-scale comparative metagenome analysis
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