Estimating effective population size from samples of sequences: inefficiency of pairwise and segregating sites as compared to phylogenetic estimates.

Keywords

Pairwise comparison, Phylogenetic tree, Mathematics, Divergence (linguistics), Statistics

References

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• DNA polymorphism detectable by restriction endonucleases.Masatoshi Nei, Fumio Tajima — 1981
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• The probabilities of rooted tree-shapes generated by random bifurcationEdith Harding — 1971
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Cited by

• What Amino Acid Properties Affect Protein Evolution?Xuhua Xia, Wen‐Hsiung Li — 1998
• Analyses of Genotypic Diversity among North, South, and Central American Isolates of Sugarcane Yellow Leaf Virus: Evidence for Colombian Origins and for Intraspecific Spatial Phylogenetic VariationMałgorzata Kożuch — 2002
• The burgeoning field of statistical phylogeography俊徳 大高, Yan Ho Lee, Timothy Bales — 2003
• Testing Whether Certain Traits have Caused Amplified Diversification: An Improved Method Based on a Model of Random Speciation and ExtinctionSivalingum. Thaver — 1993
• On the Use of Bootstrapped Topologies in Coalescent-Based Bayesian MCMC Inference: A Comparison of Estimation and Computational EfficienciesAllen G. Rodrigo, Peter Tsai, Helen Shearman — 2009
• Population Genetics and Effective Population Size of the Brazilian Free-Tailed Bat, Tadarida brasiliensis (Chiroptera: Molossidae)Amy Russell — 2003
• Diversité génétique et taille efficace chez les populations de poissons sauvages : le cas du saumon atlantique un poisson migrateur amphihalin menacéNatacha Nikolic — 2009
• A Comparison of Coalescent Estimation SoftwareKristen Piggott Shepherd — 2002
• Computational and Evolutionary Analysis of HIV Molecular SequencesAllen G. Rodrigo, Gerald H. Learn — 2001
• Molecular and biological characterization of human immunodeficiency virus type 1 envelope gp120 associated with maternal-fetal transmissionErik Matala — 1999
• Population genetics of the school shark (Galeorhinus galeus) in New Zealand, Australian and Chilean watersHernández Muñoz, Sebastián Ignacio — 2013
• Living in a tilted world: climate change and geography limit speciation in Old World anchovies (Engraulis; Engraulidae)W. Stewart Grant, Brian W. Bowen — 2006
• Article Commentary: Snapshots of Tree SpaceZheng Wang, Francesc López-Giréidez, Jeffrey P. Townsend — 2009
• The ecology and conservation of endangered saproxylic hoverflies (Diptera, Syrphidae) in ScotlandEllen L. Rotheray — 2012
• Integrated Nested Laplace Approximation for Bayesian Nonparametric PhylodynamicsJulia A. Palacios, Vladimir N. Minin — 2012
• A phylogenetic estimator of effective population size or mutation rate.Yun Fu — 1994
• Inferring population history from genealogiesKonrad Lohse — 2010
• Human migrations and population structure: what we know and why it matters.David B. Goldstein, Lounès Chikhi — 2002
• Maximum likelihood estimation of population growth rates based on the coalescent.Mary K. Kuhner, Jon Yamato, Joseph Felsenstein — 1998
• Consequences of recombination on traditional phylogenetic analysis.Mikkel Heide Schierup, Jotun Hein — 2000

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