Analysis of six protein structures predicted by comparative modeling techniques
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Summary
The protein structures of six comparative modeling targets were predicted in a procedure that relied on improved energy minimization, without empirical rules, to position all new atoms, and more residues were predicted than form the common region shared by the two crystal structures.
- Type
- article
- Published
- 1995-12-01
- Cited by
- 43
- References
- 44
- OpenAlex
- https://openalex.org/W2011828982
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:43117407
Keywords
Protein structure, Ramachandran plot, Chemistry, Crystal structure, Sequence alignment
References
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- Mathematical analysis of physical problems
- Sugar specificity of human beta-cell glucokinase: correlation of molecular models with kinetic measurements.
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- Structure of the histidine-containing phosphocarrier protein HPr from Bacillus subtilis at 2.0-A resolution.
- Matrix computation for engineers and scientists
- Comparison of four independently determined structures of human recombinant interleukin–4
Cited by
- Use of homology modeling to predict residues involved in ligand recognition.
- A self‐assembling neural network for modeling polymers
- Mechanistic Studies Of Drug Resistance Conferred By An ABC Transporter DrrAB
- Structural studies aimed at improving the antigenicity of congopain.
- Comparison of the substrate specificity of the human T-cell leukemia virus and human immunodeficiency virus proteinases.
- Clustering system and clustering support vector machine for local protein structure prediction
- Structural and catalytic properties and homology modelling of the human nucleoside diphosphate kinase C, product of the DRnm23 gene.
- Protein Tertiary Structure Modeling
- Assessment of comparative modeling in CASP2
- Automated protein modelling--the proteome in 3D.
- SLC30A3 (ZnT3) Oligomerization by Dityrosine Bonds Regulates Its Subcellular Localization and Metal Transport Capacity
- Structural Basis for Executioner Caspase Recognition of P5 Position in Substrates
- The Extreme C Terminus of the ABC Protein DrrA Contains Unique Motifs Involved in Function and Assembly of the DrrAB Complex*
- Meeting review: the Second meeting on the Critical Assessment of Techniques for Protein Structure Prediction (CASP2), Asilomar, California, December 13-16, 1996.
- Synthesis of (R)- and (S)-β-hydroxyphosphonate acyclonucleosides: structural analogues of Adefovir (PMEA)
- SWISS‐MODEL and the Swiss‐Pdb Viewer: An environment for comparative protein modeling
- The three-dimensional model of Dictyostelium discoideum racE based on the human rhoA-GDP crystal structure.
- A neural-network controlled dynamic evolutionary scheme for global molecular geometry optimization
- Model Structure of Decorin and Implications for Collagen Fibrillogenesis*
- Comparative Studies on the Substrate Specificity of Avian Myeloblastosis Virus Proteinase and Lentiviral Proteinases (*)
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