The gateway to transcription: identifying, characterizing and understanding promoters in the eukaryotic genome

Keywords

Promoter, Computational biology, Biology, Transcriptional regulation, Chromatin

References

• Yeast transcriptional regulatory mechanisms.Carmen Barceló, Ana Labarta — 1995
• Regulatory diversity among metazoan co-activator complexesDylan J. Taatjes, Michael T. Marr, Robert Tjian — 2004
• Content Analysis of the Core Promoter Region of Human GenesVladimir B. Bajić, Vidhu Choudhary, Chuan Koh Hock — 2004
• Transcriptional initiation is controlled by upstream GC-box interactions in a TATAA-less promoterMichael C. Blake, Robert Jambou, Andrew G. Swick — 1990
• Organization and expression of eucaryotic split genes coding for proteins.Richard Breathnach, Pierre Chambon — 1981
• Structure and mechanism of the RNA polymerase II transcription machinerySteven Hahn — 2004
• Promoter prediction analysis on the whole human genomeVladimir B. Bajić, Sin Lam Tan, Yutaka Suzuki — 2004
• Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides.Kazuo Maruyama, Sumio Sugano — 1994
• Drosophila TFIID binds to a conserved downstream basal promoter element that is present in many TATA-box-deficient promoters.Thomas W. Burke, James T. Kadonaga — 1996
• Global and Hox-specific roles for the MLL1 methyltransferase.Matthew G. Guenther, Richard G. Jenner, B. Chevalier — 2005
• Genomic characterization reveals a simple histone H4 acetylation code.Michael F. Dion, Steven J. Altschuler, Lani F. Wu — 2005
• Patterning chromatin: form and function for H2A.Z variant nucleosomes.Ryan Raisner, Hiten D. Madhani — 2006
• Evidence for nucleosome depletion at active regulatory regions genome-wideCheol‐Koo Lee, Yoichiro Shibata, Bhargavi Rao — 2004
• Decoding the nucleosome.Bryan M. Turner — 1993
• Reading signals on the nucleosome with a new nomenclature for modified histonesBryan M. Turner — 2005
• Transcriptional activation by Sp1 as directed through TATA or initiator: specific requirement for mammalian transcription factor IID.Stephen T. Smale, Martin C. Schmidt, A J Berk — 1990
• The DPE, a core promoter element for transcription by RNA polymerase IIJames T. Kadonaga — 2002
• The dynamics of chromatin remodeling at promoters.Jane Mellor — 2005
• The language of covalent histone modificationsBrian D. Strahl, C. David Allis — 2000
• Gene regulation by microRNAs.Richard W. Carthew — 2006

Cited by

• Identification of Relevant Protein-Gene Associations by Integrating Gene Expression Data and Transcriptional Regulatory Networks.Angel A. Alvarez — 2010
• Genome-wide occupancy analysis by ChIP-chip and ChIP-Seq.Hong Hao — 2012
• Analysis of Developmental Epistasis by Chromatin Immunoprecipitation in Xenopus laevisKatrin Mansperger — 2007
• Evolution des génomes microsporidiens et mécanisme d'adaptation moléculaire chez les parasites intracellulaires obligatoiresAbdel Belkorchia — 2007
• Regulators of chromatin and transcription in DrosophilaFilip Crona — 2013
• Functional consequences of the direct physical interaction between E2A transcription factors and CBP/p300Brandy D. Hyndman — 2007
• Investigating venom synthesis: exploring the composition, variation and gene expression dynamics of Bitis arietans venomRachel B. Currier — 2012
• Estudi del factor de transcripció Cabut en el desenvolupament i la regeneració de Drosophila melanogasterM. Romero — 2013
• Transcriptional and post-transcriptional gene regulatory mechanisms in the malaria parasite, Plasmodium falciparumHenriëtte Renée Hobbs — 2010
• Transcription et épissage des gènes d’immunoglobulines non-productifs : étude des mécanismes mis en jeu et de leur influence au cours du développement des lymphocytes BAurélien Tinguely — 2013
• Structure-Function Analysis of the Drosophila melanogaster Caudal Transcription Factor Provides Insights into Core Promoter-preferential Activation*Hila Shir-Shapira, Julia Sharabany, Matan Filderman — 2015
• Unique and unifying themes in the mechanisms regulating the expression of the arabidopsis thaliana PR-1 and Solanum tuberosum PR-10a inducible defense genesPatrick J Boyle — 2010
• Cellular Targeting for Cochlear Gene TherapyAllen F. Ryan, Lina Mullen, Joni K. Doherty — 2009
• Studying histone modifications and their genomic functions by employing chromatin immunoprecipitation and immunoblotting.Ranveer Singh Jayani, Praveena L. Ramanujam, Sanjeev Galande — 2010
• FUNCTION OF CORE PROMOTERS IN DIFFERENTIAL GENE REGULATION DURING EMBRYOGENESISJochen Gehrig — 2010
• Cloning and characterization of the Iron-Regulated Transporter (IRT) genes and their transcription factors in PopulusDanqiong Huang — 2015
• Patterns and Complexity in Biological Systems: A Study of Sequence Structure and Ontology-based NetworksM. Girvan, Kimberly Glass — 2010
• ElemeNT: a computational tool for detecting core promoter elementsAnna Sloutskin, Yehuda M. Danino, Yaron Orenstein — 2015
• The core promoter: At the heart of gene expression.Yehuda M. Danino, Dan Even, Diana Ideses — 2015
• Genome-wide analysis of the relationships between DNaseI HS, histone modifications and gene expression reveals distinct modes of chromatin domainsWenjie Shu, Hebing Chen, Xiaochen Bo — 2011

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