Cotranslational Protein Folding inside the Ribosome Exit Tunnel

Keywords

Ribosome, Förster resonance energy transfer, Biophysics, Protein folding, Folding (DSP implementation)

References

• Mechanical force releases nascent chain–mediated ribosome arrest in vitro and in vivoFernando Navarro Valdivielso — 2015
• Thermodynamics of Zn2+ binding to Cys2His2 and Cys2HisCys zinc fingers and a Cys4 transcription factor site.Anne M. Rich, Elisa Bombarda, Austin Schenk — 2012
• Cell-free translation reconstituted with purified componentsYoshihiro Shimizu, Akio Inoue, Yukihide Tomari — 2001
• Different conformations of nascent polypeptides during translocation across the ER membraneIsmael Mingarro, Ing-Marie Nilsson, Paul Whitley — 2000
• Transmembrane Segments Form Tertiary Hairpins in the Folding Vestibule of the Ribosome.LiWei Tu, Pooja Khanna, Carol Deutsch — 2013
• Sequence-dependent elongation dynamics on macrolide-bound ribosomesMagnus Johansson, Jin Chen, Albert Tsai — 2014
• α-Helical nascent polypeptide chains visualized within distinct regions of the ribosomal exit tunnelShashi Bhushan, Marco Gartmann, Mario Halić — 2010
• Irreversible chemical steps control intersubunit dynamics during translationRyan Marshall, Magdalena Dorywalska, Joseph D. Puglisi — 2008
• Zinc-dependent structure of a single-finger domain of yeast ADR1.Grace Párraga, Suzanna J. Horvath, Amur Eisen — 1988
• Structure of the Bacillus subtilis 70S ribosome reveals the basis for species-specific stallingDaniel Sohmen, Shinobu Chiba, Naomi Shimokawa-Chiba — 2015
• Timing is everything: unifying codon translation rates and nascent proteome behavior.Daniel A. Nissley, Edward P. O’Brien — 2014
• Cotranslational Folding Inhibits Translocation from Within the Ribosome–Sec61 Translocon ComplexBrian J. Conti, Johannes Elferich, Zhongying Yang — 2014
• The dynamics of SecM-induced translational stallingAlbert Tsai, Guy Kornberg, Magnus Johansson — 2014
• Co-translational Folding of an Eukaryotic Multidomain Protein in a Prokaryotic Translation System*Vyacheslav A. Kolb, Eugene V. Makeyev, Alexander S. Spirin — 2000
• The geometry of the ribosomal polypeptide exit tunnel.Neil Voss, Mark Gerstein, Thomas A. Steitz — 2006
• Cotranslational protein folding within the ribosome tunnel influences trigger-factor recruitment.Ku-Feng Lin, Chia‐Sui Sun, Yichen Huang — 2012
• Preparative scale expression of membrane proteins in Escherichia coli-based continuous exchange cell-free systemsDániel Schwarz, Friederike Junge, Florian Durst — 2007
• Tertiary Interactions within the Ribosomal Exit TunnelAndrey Kosolapov, Carol Deutsch — 2009
• Replica-exchange molecular dynamics method for protein foldingYuji Sugita, Yuko Okamoto — 1999
• Charge-driven dynamics of nascent chain movement through the SecYEG transloconNurzian Ismail, Rickard Hedman, Martin Lindén — 2015

Cited by

• Kinetic and structural comparison of a protein’s cotranslational folding and refolding pathways幹文 横山, 泰子 小金丸, 哲史 北條 — 2018
• The dipeptide conformations of all twenty amino acid types in the context of biosynthesisRobert P. Bywater, Valera Veryazov — 2015
• Coupling of mRNA structure rearrangement to ribosome movement during bypassing of non-coding regionsJin Chen, Arthur Coakley, Michelle O’Connor — 2015
• Cotranslational protein folding on the ribosome monitored in real timeWolf Holtkamp, Goran Kokić, Markus Jäger — 2015
• Organization and Regulation of Mitochondrial Protein Synthesis.Martin Ott, Alexey Amunts, Alan Brown — 2016
• Protein Folding Activity of the Ribosome and Its Implication in Prion ProcessesYanhong Pang — 2016
• Caractérisation structurale et fonctionnelle de la peptide déformylase du phage Vp16TJulien Nusbaum — 2016
• Translation regulation via nascent polypeptide-mediated ribosome stalling.Daniel N. Wilson, Stefan Arenz, Roland Beckmann — 2016
• Small protein domains fold inside the ribosome exit tunnelJacopo Marino, Gunnar von Heijne, Roland Beckmann — 2016
• Trigger Factor Reduces the Force Exerted on the Nascent Chain by a Cotranslationally Folding Protein.Ola B. Nilsson, Annika Müller-Lucks, Günter Krämer — 2016
• A structural ensemble of a ribosome-nascent chain complex during co-translational protein foldingLisa D. Cabrita, Anaïs M. E. Cassaignau, Hélène Launay — 2016
• Co‐ and Post‐Translational Protein Folding in the ERLars Ellgaard, Nicholas McCaul, Anna Chatsisvili — 2016
• Protein Elongation, Co-translational Folding and Targeting.Marina V. Rodnina, Wolfgang Wintermeyer — 2016
• How Widespread is Metabolite Sensing by Ribosome-Arresting Nascent Peptides?Britta Seip, C.A. Innis — 2016
• Function of Elongation Factor P in TranslationLili Klara Dörfel — 2016
• The ribosome in action: Tuning of translational efficiency and protein foldingMarina V. Rodnina — 2016
• Recoding: reprogrammed genetic decoding with an emphasis on antizyme regulatory frameshiftingMartina M. Yordanova — 2016
• Dynamic Behavior of Trigger Factor on the Ribosome.J. Deeng, Kwok‐Yan Chan, Eli O. van der Sluis — 2016
• Strolling Toward New Concepts.Koreaki Ito — 2016
• In vivo aspects of protein folding and quality controlDavid Balchin, Manajit Hayer‐Hartl, F. Ulrich Hartl — 2016

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