Pithovirus sibericum, a new bona fide member of the “Fourth TRUC” club

Keywords

Archaea, Biology, Phyletic gradualism, Phylogenetic tree, Gene

References

• “Megavirales”, a proposed new order for eukaryotic nucleocytoplasmic large DNA virusesR. Singh, M. L. Sharma — 2013
• TM4: a free, open-source system for microarray data management and analysis.A Saeed, Vasily Sharov, Joseph White — 2003
• Welcome to pandoraviruses at the ‘Fourth TRUC’ clubVikas Sharma, Philippe Colson, Olivier Chabrol — 2015
• Plant genomes enclose footprints of past infections by giant virus relativesFlorian Maumus, Aline Epert, Fabien Nogué — 2014
• TRUC or the Need for a New Microbial ClassificationDidier Raoult — 2013
• Origin of giant viruses from smaller DNA viruses not from a fourth domain of cellular lifeNatalya Yutin, Yuri I. Wolf, Eugene V. Koonin — 2014
• Phylogenetic and Phyletic Studies of Informational Genes in Genomes Highlight Existence of a 4th Domain of Life Including Giant VirusesMickaël Boyer, Mohammed‐Amin Madoui, Grégory Gimenez — 2010
• DNA-Dependent RNA Polymerase Detects Hidden Giant Viruses in Published DatabanksVikas Sharma, Philippe Colson, Roch Giorgi — 2014
• The Giant Cafeteria roenbergensis Virus That Infects a Widespread Marine Phagocytic Protist Is a New Member of the Fourth Domain of LifePhilippe Colson, Grégory Gimenez, Mickaël Boyer — 2011
• Giant virus with a remarkable complement of genes infects marine zooplanktonMatthias Fischer, Michael J. Allen, William H. Wilson — 2010
• A Giant Virus in AmoebaeBernard La Scola, Stéphane Audic, Catherine Robert — 2003
• Whole-Genome Sequencing of a Pandoravirus Isolated from Keratitis-Inducing AcanthamoebaMarkus Antwerpen, Enrico Georgi, Lothar Zoeller — 2015
• OrthoMCL: identification of ortholog groups for eukaryotic genomes.Li Li, Christian J. Stoeckert, David S. Roos — 2003
• Genome trees and the tree of life.Yuri I. Wolf, Igor B. Rogozin, Nick V. Grishin — 2002
• The rpoB gene as a tool for clinical microbiologists.Toïdi Adékambi, Michel Drancourt, Didier Raoult — 2009
• Thirty-thousand-year-old distant relative of giant icosahedral DNA viruses with a pandoravirus morphologyMatthieu Legendre, Julia Bartoli, Lyubov Shmakova — 2014
• Origin and Evolution of Eukaryotic Large Nucleo-Cytoplasmic DNA VirusesEugene V. Koonin, Natalya Yutin — 2010
• Informational Gene Phylogenies Do Not Support a Fourth Domain of Life for Nucleocytoplasmic Large DNA VirusesTom A. Williams, T. Martin Embley, Eva Heinz — 2011
• FastTree 2 – Approximately Maximum-Likelihood Trees for Large AlignmentsMorgan N. Price, Paramvir Dehal, Adam P. Arkin — 2010
• Pandoraviruses: Amoeba Viruses with Genomes Up to 2.5 Mb Reaching That of Parasitic EukaryotesNadège Philippe, Matthieu Legendre, Gabriel Doutre — 2013

Cited by

• Viruses in close associations with free-living amoebaeE. P. Velikhov, V. V. Chernukha — 2015
• Mimivirus inaugurated in the 21st century the beginning of a reclassification of viruses.Vikas Sharma, Philippe Colson, Pierre Pontarotti — 2016
• Giant viruses and the origin of modern eukaryotes.Patrick Forterre, Morgan Gaïa — 2016
• DNA repair genes in the Megavirales pangenome.Romain Blanc‐Mathieu, Hiroyuki Ogata — 2016
• Giants among larges: how gigantism impacts giant virus entry into amoebae.Rodrigo Araújo Lima Rodrigues, Jônatas Santos Abrahão, Betânia Paiva Drumond — 2016
• Giant Viruses of Amoebas: An UpdateSarah Aherfi, Philippe Colson, Bernard La Scola — 2016
• The Expanding Family of VirophagesMeriem Bekliz, Philippe Colson, Bernard La Scola — 2016
• Promoter Motifs in NCLDVs: An Evolutionary PerspectiveGraziele Pereira Oliveira, Ana Andrade, Rodrigo Araújo Lima Rodrigues — 2017
• Free-Living Amoebae as Hosts for and Vectors of Intracellular Microorganisms with Public Health SignificanceCarsten Balczun, Patrick Scheid — 2017
• Ubiquitous giants: a plethora of giant viruses found in Brazil and AntarcticaAna Cláudia dos S. P. Andrade, Thalita Souza Arantes, Rodrigo Araújo Lima Rodrigues — 2018
• Ancestrality and Mosaicism of Giant Viruses Supporting the Definition of the Fourth TRUC of MicrobesPhilippe Colson, Anthony Levasseur, Bernard La Scola — 2018
• Discovery and Further Studies on Giant Viruses at the IHU Mediterranee Infection That Modified the Perception of the VirosphereClara Rolland, Julien Andréani, Amina Cherif Louazani — 2019
• Protozoal giant viruses: agents potentially infectious to humans and animalsBeata Tokarz–Deptuła, Paulina Niedźwiedzka‐Rystwej, Paulina Czupryńska — 2019
• Giant virus vs amoeba: fight for supremacyGraziele Pereira Oliveira, Bernard La Scola, Jônatas Santos Abrahão — 2019
• Rhizomal Reclassification of Living OrganismsAhmad Ibrahim, Philippe Colson, Vicky Merhej — 2021
• Metagenomic and metabolic analyses of poly-extreme microbiome from an active crater volcano lake.Betsy Anaid Peña-Ocaña, Cesar Iván Ovando-Ovando, Fernando Puente‐Sánchez — 2021

Related papers

• Phyletic diversity in higher plantsTsvi Sachs — 1978
• Errata: Character Displacement and Phyletic Change in the Evolution of the Radiolarian Subfamily Artiscinae1981
• The relationships of the neotropical genus Cichl. (Perciformes, Cichlidae): a phyletic analysis including some functional considerationsMelanie L. J. Stiassny — 1982
• The phyletic position of the ParapithecidaeJohn G. Fleagle, Richard F. Kay — 1987
• The two-domain tree of life is linked to a new root for the ArchaeaKasie Raymann, Céline Brochier‐Armanet, Simonetta Gribaldo — 2015
• Microinversions in mammalian evolutionMark Chaisson, Benjamin J. Raphael, Pavel A. Pevzner — 2006
• Earliest phylogenetic branchings: comparing rRNA-based evolutionary trees inferred with various techniques.G J Olsen — 1987