A new computational method for detection of chimeric 16S rRNA artifacts generated by PCR amplification from mixed bacterial populations

Keywords

Chimera (genetics), Computational biology, Bacterial artificial chromosome, Sequence alignment, Biology

References

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Cited by

• Microbial biodiversity in Tasmanian cavesVan de Kamp, Jodie Lee — 2004
• Elucidation of the Microbial Consortium of the Ubiquitous Shore Sponge, Tedania ignisClarisse Sullivan — 2015
• Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecologyGerard Muyzer, Kornelia Smalla — 2004
• A jumping profile Hidden Markov Model and applications to recombination sites in HIV and HCV genomesAnne-Kathrin Schultz, Ming Zhang, Thomas Leitner — 2006
• Sequences, the environment and fungiJulian Mitchell, Alga Zuccaro — 2006
• Phylogenetic Analyses of Archaeal Ribosomal DNA Sequences from Salt Pan Sediment of Mumbai, IndiaNasier Ahmad, Sarika Sharma, Farrah Khan — 2008
• Proposals for classification methods dedicated to biological dataAnne Muriel Arigon, Guy Perrière, Manolo Gouy — 2010
• Automatic identification of large collections of protein-coding or rRNA sequences.Anne-Muriel Arigon, Guy Perrière, Manolo Gouy — 2008
• Molecular characterization of bacterial population in the forest soil of Kashmir, IndiaNasier Ahmad, Sarojini Johri, Malik Zainul Abdin — 2009
• A molecular microbial ecology approach to studying hemodialysis water and fluid.Margarita Gomila, J. Gascó, J. Gil — 2006
• Resequencing a Set of Strings Based on a Target StringChih‐En Kuo, Yue-Li Wang, Jiajie Liu — 2015
• Phylogenetic Characterization of Archaea in Saltpan SedimentsNasier Ahmad, Sarojini Johri, Phalisteen Sultan — 2011
• Phylogenetic analysis of bacterial communities associated with ectoparasitic chewing lice of pocket gophers: A culture-independent approachDavid L. Reed, Mark S. Hafner — 2002
• Diversity In Symbiotic Dinoflagellates (Pyrrhophyta) from Seven Scleractinian Coral Species: Restriction Enzyme Analysis of Small Subunit Ribosomal RNA GenesHélène Taiana Darius, Catherine Dauga, Patrick A. D. Grimont — 1998
• PCR-Induced Sequence Artifacts and Bias: Insights from Comparison of Two 16S rRNA Clone Libraries Constructed from the Same SampleSilvia G. Acinas, Ramahi Bhushan Sarma-Rupavtarm, Vanja Klepac‐Ceraj — 2005
• Microvariation Artifacts Introduced by PCR and Cloning of Closely Related 16S rRNA Gene SequencesArjen Speksnijder, George A. Kowalchuk, Sander de Jong — 2001
• Molecular Evidence for Association of Chlamydiales Bacteria with Epitheliocystis in Leafy Seadragon (Phycodurus eques), Silver Perch (Bidyanus bidyanus), and Barramundi (Lates calcarifer)Adam Meijer, Paul Roholl, Jacobus M. Ossewaarde — 2006
• Sequence Analysis of Marine Virus Communities Reveals that Groups of Related Algal Viruses Are Widely Distributed in NatureSteven M. Short, Curtis A. Suttle — 2002
• Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons.Brian J. Haas, Dirk Gevers, Ashlee M. Earl — 2011
• The double helix meets the crystal lattice: The power and pitfalls of nucleic acid approaches for biomineralogical investigationsPatricia L. Siering — 1998

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