Twelve novel HGD gene variants identified in 99 alkaptonuria patients: focus on ‘black bone disease’ in Italy
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Summary
Using mCSM and DUET, computational approaches based on the protein 3D structure, the novel missense variants are predicted to affect the activity of the enzyme by three mechanisms: decrease of stability of individual protomers, disruption of protomer-protomer interactions or modification of residues in the region of the active site.
- Type
- article
- Published
- 2015-03-25
- Cited by
- 100
- References
- 39
- Access
- Open access
- OpenAlex
- https://openalex.org/W1512701088
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:23416448
Keywords
Alkaptonuria, Genetics, Gene, Disease, Focus (optics)
References
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Cited by
- pkCSM: Predicting Small-Molecule Pharmacokinetic and Toxicity Properties Using Graph-Based Signatures
- Alkaptonuria: An example of a "fundamental disease"--A rare disease with important lessons for more common disorders.
- Mycobacterium tuberculosis whole genome sequencing and protein structure modelling provides insights into anti-tuberculosis drug resistance
- Tyrosinase, could it be a missing link in ochronosis in alkaptonuria?
- mCSM-AB: a web server for predicting antibody–antigen affinity changes upon mutation with graph-based signatures
- In silico functional dissection of saturation mutagenesis: Interpreting the relationship between phenotypes and changes in protein stability, interactions and activity
- mCSM-lig: quantifying the effects of mutations on protein-small molecule affinity in genetic disease and emergence of drug resistance
- Cytoskeleton Aberrations in Alkaptonuric Chondrocytes
- Variation in Human Cytochrome P-450 Drug-Metabolism Genes: A Gateway to the Understanding of Plasmodium vivax Relapses
- Comparative proteomics in alkaptonuria provides insights into inflammation and oxidative stress.
- Mutations at protein-protein interfaces: Small changes over big surfaces have large impacts on human health.
- Arpeggio: A Web Server for Calculating and Visualising Interatomic Interactions in Protein Structures
- Genetics of alkaptonuria – an overview
- Nitisinone: A review
- Histological and Ultrastructural Characterization of Alkaptonuric Tissues
- Familial STAG2 germline mutation defines a new human cohesinopathy
- mCSM–NA: predicting the effects of mutations on protein–nucleic acids interactions
- Genomes, structural biology and drug discovery: combating the impacts of mutations in genetic disease and antibiotic resistance
- Combating mutations in genetic disease and drug resistance: understanding molecular mechanisms to guide drug design
- SDM: a server for predicting effects of mutations on protein stability
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