Algorithms and tools for genome assembly and metagenome analysis
Explore this paper's citation graph
Summary
A software is described that computes so-called scaffolds by ordering and sorting large fragments of an unfinished genome assembly with regard to a related reference genome that facilitates the successful completion of the final genome sequence.
- Type
- dissertation
- Published
- 2009-01-01
- Cited by
- 1
- References
- 173
- OpenAlex
- https://openalex.org/W81644494
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:27803079
Keywords
Metagenomics, Computational biology, Genome, Sequence assembly, Biology
References
- Base-calling of automated sequencer traces using phred. I. Accuracy assessment.
- THE STRUCTURE OF YEAST NUCLEIC ACID
- A meta-viewer for biomolecular data
- Syntenic Layout of Two Assemblies of Related Genomes
- Ocean Study Yields a Tidal Wave of Microbial DNA
- Nucleotide sequence analysis of DNA. II. Complete nucleotide sequence of the cohesive ends of bacteriophage lambda DNA.
- Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite
- A restriction enzyme from Hemophilus influenzae. I. Purification and general properties.
- Application of 'next-generation' sequencing technologies to microbial genetics
- Habitat-Lite: A GSC Case Study Based on Free Text Terms for Environmental Metadata
- A Dataset Generator for Whole Genome Shotgun Sequencing
- TETRA: a web-service and a stand-alone program for the analysis and comparison of tetranucleotide usage patterns in DNA sequences
- A whole-genome assembly of Drosophila.
- The Sorcerer II Global Ocean Sampling Expedition: Expanding the Universe of Protein Families
- Harnessing genomics for evolutionary insights.
- Metagenomic Analysis of Coastal RNA Virus Communities
- Genomics: The personal side of genomics
- Fluorescence detection in automated DNA sequence analysis
- Insight into the plasmid metagenome of wastewater treatment plant bacteria showing reduced susceptibility to antimicrobial drugs analysed by the 454-pyrosequencing technology.
- Comparative metagenomics of Daphnia symbionts
Cited by
No citing papers recorded for this paper.