Proteomic tools for environmental microbiology—A roadmap from sample preparation to protein identification and quantification
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Summary
This review provides an overview on the complex portfolio of state‐of‐the‐art proteomics and highlights the basic principles of key methods, ranging from sample preparation of laboratory or environmental samples, via protein/peptide separation (gel‐based or gel‐free) and different types of mass spectrometric protein/ peptide analyses, to protein identification and abundance determination.
- Type
- article
- Published
- 2013-10-01
- Cited by
- 47
- References
- 204
- OpenAlex
- https://openalex.org/W23894077
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:5527103
Keywords
Computer science
References
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- Environmental Microbiology and Biotechnology: Progress and Prospects
- Characterization of N-terminal protein modifications in Pseudomonas aeruginosa PA14.
- Proteomic Analysis of Carbon Concentrating Chemolithotrophic Bacteria Serratia sp. for Sequestration of Carbon Dioxide
- Proteomics of arsenic stress in the gram-positive organism Exiguobacterium sp. PS NCIM 5463
- Assessing the Exoproteome of Marine Bacteria, Lesson from a RTX-Toxin Abundantly Secreted by Phaeobacter Strain DSM 17395
- Fifteen years of physiological proteo(geno)mics with (marine) environmental bacteria
- Metaproteomics of complex microbial communities in biogas plants
- Fractionation of biogas plant sludge material improves metaproteomic characterization to investigate metabolic activity of microbial communities
- Secretome analysis of Pleurotus eryngii reveals enzymatic composition for ramie stalk degradation
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- Exploring the proteomic characteristics of the Escherichia coli B and K-12 strains in different cellular compartments.
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