ALLPATHS: de novo assembly of whole-genome shotgun microreads.
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Summary
A general method for genome assembly that can be applied to all types of DNA sequence data, not only short read data, but also conventional sequence reads is described.
- Type
- article
- Published
- 2008-05-01
- Cited by
- 890
- References
- 10
- Access
- Open access
- OpenAlex
- https://openalex.org/W18340039
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:31638563
Keywords
Animal welfare, Biology, Ecology
References
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- Genome-Wide Mapping of in Vivo Protein-DNA Interactions
- An Eulerian path approach to DNA fragment assembly
- DNA sequencing with chain-terminating inhibitors.
- ARACHNE: a whole-genome shotgun assembler.
- Extending assembly of short DNA sequences to handle error
- Assembling millions of short DNA sequences using SSAKE
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- Genome sequence and emended description of Leisingera nanhaiensis strain DSM 24252T isolated from marine sediment
- Complete Genome Sequence of Salmonella enterica subsp. enterica Serovar Enteritidis Strain SEJ
- The Genome of Winter Moth (Operophtera brumata) Provides a Genomic Perspective on Sexual Dimorphism and Phenology
- Bibliometric analysis of publications on Campylobacter: (2000–2015)
- Fuzzy k-mers and their application to comparative genome assembly
- Scaling short read de novo DNA sequence assembly to gigabase genomes
- Algorithms for Next-Generation High-Throughput Sequencing Technologies
- A user's guide to quantitative and comparative analysis of metagenomic datasets.
- Aspects of Penicillium genomics : Molecular combing genome assembly, genetic exchange in food and potential for secondary metabolite production
- From millions to one: theoretical and concrete approaches to De Novo assembly using short read DNA sequences
- Bioinformatic methods for eukaryotic RNA-Seq-based promoter identification
- Bioinformatics : Tools and Applications
- SNP discovery by transcriptome pyrosequencing.
- Genomics for key players in the N cycle from guinea pigs to the next frontier.
- A space efficient representation for sparse de Bruijn subgraphs
- Sequencing and genome assembly using next-generation technologies.
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