Trace: Tennessee Research and Creative Exchange Prodigal: Prokaryotic Gene Recognition and Translation Initiation Site Identification Recommended Citation Prodigal: Prokaryotic Gene Recognition and Translation Initiation Site Identification
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Summary
This data indicates that the number of correct identifications of genes and of the translation initiation sites for each gene in microbial organisms has improved steadily over the past decade, but there is still room for improvement.
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References
- Prediction of translation initiation site for microbial genomes with TriTISA
- Terminal-sequence analysis of bacterial ribosomal RNA. Correlation between the 3'-terminal-polypyrimidine sequence of 16-S RNA and translational specificity of the ribosome.
- Large-scale identification of N-terminal peptides in the halophilic archaea Halobacterium salinarum and Natronomonas pharaonis.
- ProTISA: a comprehensive resource for translation initiation site annotation in prokaryotic genomes
- EcoGene: a genome sequence database for Escherichia coli K-12
- GS-Finder: a program to find bacterial gene start sites with a self-training method.
- CRITICA: coding region identification tool invoking comparative analysis.
- Basic local alignment search tool.
- Operon prediction using both genome-specific and general genomic information
- The Microbe browser for comparative genomics
- On the Theory of Dynamic Programming.
- MED: a new non-supervised gene prediction algorithm for bacterial and archaeal genomes
- Determination and comparison of the baseline proteomes of the versatile microbe Rhodopseudomonas palustris under its major metabolic states.
- Identifying bacterial genes and endosymbiont DNA with Glimmer
- TICO: a tool for improving predictions of prokaryotic translation initiation sites
- GeneMark.hmm: new solutions for gene finding.
- Artemis: sequence visualization and annotation
- BMC Bioinformatics
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