The Gut Microbiota composition of Feral and Tamworth Pigs determined using High-Throughput Culturomics and Metagenomics Reveals Compositional Variations When Compared to the Commercial Breeds
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Summary
The single medium based pig microbiota library is a resource to better understand pig gut microbial ecology and function by assembling simple to complex microbiota communities in bioreactors or germfree animal models.
- Type
- preprint
- Published
- 2019-08-24
- Cited by
- 0
- References
- 42
- Access
- Open access
- OpenAlex
- https://openalex.org/W2969852945
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:202011425
Keywords
Metagenomics, Microbiome, Bacteroidetes, Firmicutes, Biology
References
- RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
- MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies
- Types and Distribution of Anaerobic Bacteria in the Large Intestine of Pigs
- Cultivation of stable, reproducible microbial communities from different fecal donors using minibioreactor arrays (MBRAs)
- MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets
- Diet shapes the gut microbiome of pigs during nursing and weaning
- Taxonomic and gene-centric metagenomics of the fecal microbiome of low and high feed conversion ratio (FCR) broilers
- Cultivation-based multiplex phenotyping of human gut microbiota allows targeted recovery of previously uncultured bacteria
- Experimental test of the impacts of feral hogs on forest dynamics and processes in the southeastern US
- Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa
- Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes
- Extensive personal human gut microbiota culture collections characterized and manipulated in gnotobiotic mice
- Gut microbiomes of Malawian twin pairs discordant for kwashiorkor
- Transcriptome analysis of mRNA and miRNA in skeletal muscle indicates an important network for differential Residual Feed Intake in pigs
- Binning metagenomic contigs by coverage and composition
- CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
- Diet rapidly and reproducibly alters the human gut microbiome
- Chlortetracycline-Resistant Intestinal Bacteria in Organically Raised and Feral Swine
- Adaptation of the Cecal Bacterial Microbiome of Growing Pigs in Response to Resistant Starch Type 4
- Natural Pig Plasma Immunoglobulins Have Anti-Bacterial Effects: Potential for Use as Feed Supplement for Treatment of Intestinal Infections in Pigs
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