Mitochondrial Architecture Rearrangements Produce Asymmetrical Nonadaptive Mutational Pressures That Subvert the Phylogenetic Reconstruction in Isopoda
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Summary
It is concluded that inverted skews cause long-branch attraction phylogenetic artefacts between these taxa, and support Asellota are the most likely candidate for the basal isopod branch.
- Type
- article
- Published
- 2019-04-13
- Cited by
- 39
- References
- 116
- Access
- Open access
- OpenAlex
- https://openalex.org/W2952012055
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:145885592
Keywords
Biology, Phylogenetic tree, Phylogenetics, Evolutionary biology, Mitochondrial DNA
References
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- Which side of the tree is more basal?
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- The complete mitochondrial genome of the common sea slater, Ligia oceanica (Crustacea, Isopoda) bears a novel gene order and unusual control region features
- Adaptation of the Mitochondrial Genome in Cephalopods: Enhancing Proton Translocation Channels and the Subunit Interactions
- Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis.
- Global Coordination and Standardisation in Marine Biodiversity through the World Register of Marine Species (WoRMS) and Related Databases
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- Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework
- Ultrafast Approximation for Phylogenetic Bootstrap
- Multiple rearrangements in mitochondrial genomes of Isopoda and phylogenetic implications.
- Evolution of the Mitochondrial Genome in Mammals Living at High Altitude: New Insights from a Study of the Tribe Caprini (Bovidae, Antilopinae)
- Phylogenetic relationships among ascomycetes: evidence from an RNA polymerse II subunit.
- Natural selection shaped regional mtDNA variation in humans
- The Complete Mitochondrial DNA Sequence of the Pig (Sus scrofa)
- The complete mitochondrial genome of Limnoria quadripunctata Holthuis (Isopoda: Limnoriidae)
- Widespread Discordance of Gene Trees with Species Tree in Drosophila: Evidence for Incomplete Lineage Sorting
- Efficient likelihood computations with nonreversible models of evolution.
Cited by
- Mitochondrial Genomes of Two Thaparocleidus Species (Platyhelminthes: Monogenea) Reveal the First rRNA Gene Rearrangement among the Neodermata
- Complete mitochondrial genomes from transcriptomes: assessing pros and cons of data mining for assembling new mitogenomes
- Mitochondrial genomes and 28S rDNA contradict the proposed obsoletion of the order Tetraonchidea (Platyhelminthes: Monogenea).
- Disentangling the interplay of positive and negative selection forces that shaped mitochondrial genomes of Gammarus pisinnus and Gammarus lacustris
- Architectural instability, inverted skews and mitochondrial phylogenomics of Isopoda: outgroup choice affects the long-branch attraction artefacts
- Structure and evolution of the complete mitochondrial genome of the freshwater drum, Aplodinotus grunniens (Actinopterygii: Perciformes: Sciaenidae)
- Evolutionary history of inversions in the direction of architecture-driven mutational pressures in crustacean mitochondrial genomes
- Comparison of the complete mitochondrial genome of Phyllophorus liuwutiensis (Echinodermata: Holothuroidea: Phyllophoridae) to that of other sea cucumbers
- Disrupted architecture and fast evolution of the mitochondrial genome of Argeia pugettensis (Isopoda): implications for speciation and fitness
- Phylogeny of Terrestrial Isopods Based on the Complete Mitochondrial Genomes, Subvert the Monophyly of Oniscidea
- The complete mitochondrial genome sequence and phylogenetic analysis of Gnathopogon herzensteini(Cypriniformes, Cyprinidae, Gobioninae)
- New insights into Oniscidea (Crustacea: Isopoda) mitogenome structural features and phylogenetic placement of targeted taxa using mitogenomic and nuclear data
- Mitochondrial genomes of two Polydora (Spionidae) species provide further evidence that mitochondrial architecture in the Sedentaria (Annelida) is not conserved
- Slow crabs ‐ fast genomes: Locomotory capacity predicts skew magnitude in crustacean mitogenomes
- A review of the genus Zonophryxus Richardson, 1903 (Crustacea: Isopoda: Dajidae) with recognition of Colypurus agassizi Richardson, 1905 (Crustacea: Isopoda: Colypuridae) as a synonym of Zonophryxus similis Searle, 1914 and the requisite sinking of Colypuridae
- Building on 150 Years of Knowledge: The Freshwater Isopod Asellus aquaticus as an Integrative Eco-Evolutionary Model System
- Sequencing of the Complete Mitochondrial Genome of Pingus sinensis (Spirurina: Quimperiidae): Gene Arrangements and Phylogenetic Implications
- Chloroplast phylogenomics of unicellular and colonial Volvocales provides perspectives on the evolution of morphological characters
- Evolutionary rates of mitochondrial sequences and gene orders in Spirurina (Nematoda) are episodic but synchronised
- The complete mitochondrial genomes of Paradiplozoon yarkandense and Paradiplozoon homoion confirm that Diplozoidae evolve at an elevated rate
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