QMEC: a tool for high-throughput quantitative assessment of microbial functional potential in C, N, P, and S biogeochemical cycling
Explore this paper's citation graph
Summary
QMEC enabled the simultaneous qualitative and quantitative determination of 72 genes from 72 samples in one run, which is promising for comprehensively investigating microbially mediated ecological processes and biogeochemical cycles in various environmental contexts including those of the current global change.
- Type
- article
- Published
- 2018-08-13
- Cited by
- 366
- References
- 59
- Access
- Open access
- OpenAlex
- https://openalex.org/W2887677913
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:52071410
Keywords
Biogeochemical cycle, Cycling, Throughput, Computational biology, Chemistry
References
- Microbes as Engines of Ecosystem Function: When Does Community Structure Enhance Predictions of Ecosystem Processes?
- Cycles of soil : carbon, nitrogem, phosphorus, sulfur, micronutrients
- Antibiotic resistome and its association with bacterial communities during sewage sludge composting.
- Monitoring host responses to the gut microbiota
- GeoChip 3.0 as a high-throughput tool for analyzing microbial community composition, structure and functional activity
- Consequences of changing biodiversity
- Target enrichment using parallel nanoliter quantitative PCR amplification
- Linking microbial community structure, interactions and function in anaerobic digesters using new molecular techniques.
- Evaluating rRNA as an indicator of microbial activity in environmental communities: limitations and uses
- Response of the Abundance of Key Soil Microbial Nitrogen-Cycling Genes to Multi-Factorial Global Changes
- Denitrification activity and relevant bacteria revealed by nitrite reductase gene fragments in soil of temperate mixed forest.
- Belowground biodiversity and ecosystem functioning
- Microbial community gene expression in ocean surface waters
- qPCR: quicker and easier but don't be sloppy
- GeoChip 4: a functional gene‐array‐based high‐throughput environmental technology for microbial community analysis
- Distribution and diversity of phytate-mineralizing bacteria
- Beyond the genome: community-level analysis of the microbial world
- Assessing nitrogen transformation processes in a trickling filter under hydraulic loading rate constraints using nitrogen functional gene abundances.
- 2-Ketogluconic Acid Production and Phosphate Solubilization by Enterobacter intermedium
- Evaluation of PCR Amplification Bias by Terminal Restriction Fragment Length Polymorphism Analysis of Small-Subunit rRNA and mcrA Genes by Using Defined Template Mixtures of Methanogenic Pure Cultures and Soil DNA Extracts
Cited by
- Diversifying Anaerobic Respiration Strategies to Compete in the Rhizosphere
- Preferential flow paths shape the structure of bacterial communities in a clayey till depth profile
- Data on Quantitative Microbial Elemental Cycling (QMEC) primer design and validation
- How to disentangle microbially functional complexity: an insight from the network analysis of C, N, P and S cycling genes.
- Sanitary landfill improved CNPS microbial functional gene abundance compared to non-sanitary landfill
- Rare microbial taxa as the major drivers of ecosystem multifunctionality in long-term fertilized soils
- Different Effects of Soil Fertilization on Bacterial Community Composition in the Penicillium canescens Hyphosphere and in Bulk Soil
- High starter phosphorus fertilization facilitates soil phosphorus turnover by promoting microbial functional interaction in an arable soil.
- Microbial functional attributes, rather than taxonomic attributes, drive top soil respiration, nitrification and denitrification processes.
- Effects of Intra- and Interspecific Plant Density on Rhizosphere Bacterial Communities
- Microbial functional traits in phyllosphere are more sensitive to anthropogenic disturbance than in soil.
- Impacts of human disturbance on the biogeochemical nitrogen cycle in a subtropical river system revealed by nitrifier and denitrifier genes.
- High-throughput diagnosis of human pathogens and fecal contamination in marine recreational water.
- Phosphate-solubilising microorganisms for improved crop productivity: a critical assessment.
- Biodiversity of key-stone phylotypes determines crop production in a 4-decade fertilization experiment
- Crop production correlates with soil multitrophic communities at the large spatial scale
- Effects of Elevated CO2 on Tomato (Lycopersicon esculentum Mill.) Growth and Rhizosphere Soil Microbial Community Structure and Functionality
- Long-term organic fertilization changes soil active bacterial composition and multifunctionality: RNA-based bacterial community and qPCR-based SmartChip analysis
- Energetic supply regulates heterotrophic nitrogen fixation along a glacial chronosequence
- Persistent contamination of polycyclic aromatic hydrocarbons (PAHs) and phthalates linked to the shift of microbial function in urban river sediments.
Related papers
- Advances in Researches on Biogeochemical Circulation of C,N and P in Wetlands
- Interrelations between Si and P biogeochemical cycles—a new approach to the solution of the eutrophication problem
- The importance of time and space in biogeochemical heterogeneity and processing along the reservoir ecosystem continuum
- Statistical learning and uncommon soil microbiota explain biogeochemical responses after wildfire
- Diel biogeochemical processes and their effect on the aqueous chemistry of streams: A review
- Coupled physical and biogeochemical data-driven simulations of Massachusetts Bay in late summer: real-time and postcruise data assimilation
- BIOGEOCHEMICAL EXPLORATION FOR GOLD ORE DEPOSIT IN THICK FOREST REGION OF NORTHERN MIANLUE, SHAANXI