Keystone taxa as drivers of microbiome structure and functioning
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Summary
A definition of keystone taxa in microbial ecology is proposed and over 200 microbial keystoneTaxa that have been identified in soil, plant and marine ecosystems, as well as in the human microbiome are summarized.
- Type
- review
- Published
- 2018-05-22
- Cited by
- 2,552
- References
- 116
- Access
- Open access
- OpenAlex
- https://openalex.org/W2804854320
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:46895123
Keywords
Keystone species, Microbiome, Biology, Ecology, Taxon
References
- Intestinal Bacteria and the Regulation of Immune Cell Homeostasis
- Microbes as Engines of Ecosystem Function: When Does Community Structure Enhance Predictions of Ecosystem Processes?
- Cropping practices manipulate abundance patterns of root and soil microbiome members paving the way to smart farming
- Tritagonist as a new term for uncharacterised microorganisms in environmental systems
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- Mycorrhizal fungal diversity determines plant biodiversity, ecosystem variability and productivity
- Temporal and spatial influences incur reconfiguration of Arctic heathland soil bacterial community structure.
- Ecology of bacteria in the human gastrointestinal tract—identification of keystone and foundation taxa
- Using network analysis to explore co-occurrence patterns in soil microbial communities
- Metagenomic and network analysis reveal wide distribution and co-occurrence of environmental antibiotic resistance genes
- Microbial Co-occurrence Relationships in the Human Microbiome
- A Note on Trophic Complexity and Community Stability
- Invasive Plant Suppresses the Growth of Native Tree Seedlings by Disrupting Belowground Mutualisms
- Defining seasonal marine microbial community dynamics
- Alternative equilibria in shallow lakes.
- Host-Bacterial Mutualism in the Human Intestine
- Modular community structure suggests metabolic plasticity during the transition to polar night in ice-covered Antarctic lakes
- The role of ecological theory in microbial ecology
- A human colonic commensal promotes colon tumorigenesis via activation of T helper type 17 T cell responses
- Oxygenic photosynthesis as a protection mechanism for cyanobacteria against iron-encrustation in environments with high Fe2+ concentrations
Cited by
- Linking microbial co‐occurrences to soil ecological processes across a woodland‐grassland ecotone
- Mortality causes universal changes in microbial community composition
- Making Sense of … the Microbiome in Psychiatry
- Keystone mutualists can facilitate transition between alternative ecosystem states in the soil
- Species-Specific Root Microbiota Dynamics in Response to Plant-Available Phosphorus
- Agricultural intensification reduces microbial network complexity and the abundance of keystone taxa in roots
- Seed mucilage interacts with soil microbial community and physiochemical processes to affect seedling emergence on desert sand dunes.
- Paving the Way From the Lab to the Field: Using Synthetic Microbial Consortia to Produce High-Quality Crops
- Spartina alterniflora invasion alters soil bacterial communities and enhances soil N2O emissions by stimulating soil denitrification in mangrove wetland.
- Topical cream with live lactobacilli modulates the skin microbiome and reduce acne symptoms
- Concept of microbial gatekeepers: Positive guys?
- Diversity relations of plants and soil microbes
- Can we predict keystones?
- Reply to ‘Can we predict microbial keystones?’
- Co-occurrence patterns of the microbial community in polycyclic aromatic hydrocarbon-contaminated riverine sediments.
- Lactobacillus Dominate in the Intestine of Atlantic Salmon Fed Dietary Probiotics
- Microbial associations and spatial proximity predict North American moose (Alces alces) gastrointestinal community composition
- Soil parameters, land use, and geographical distance drive soil bacterial communities along a European transect
- Impacts of Arsenic and Antimony Co-Contamination on Sedimentary Microbial Communities in Rivers with Different Pollution Gradients
- The Purple Sea Urchin Strongylocentrotus purpuratus Demonstrates a Compartmentalization of Gut Bacterial Microbiota, Predictive Functional Attributes, and Taxonomic Co-Occurrence
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