Developing genome-wide SNPs and constructing an ultrahigh-density linkage map in oil palm
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Summary
A large number of SNPs will supply ample choices of DNA markers in analysing the genetic diversity, population structure and evolution of oil palm, and will contribute to mapping quantitative trait loci (QTL) for important traits, thus accelerating oil palm genetic improvement.
- Type
- article
- Published
- 2018-01-12
- Cited by
- 38
- References
- 46
- Access
- Open access
- OpenAlex
- https://openalex.org/W2782991086
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:34779000
Keywords
Tenera, Elaeis guineensis, Single-nucleotide polymorphism, Biology, Quantitative trait locus
References
- Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD Tags
- Draft genome sequence of an elite Dura palm and whole-genome patterns of DNA variation in oil palm
- A microsatellite‐based linkage map for song sparrows (Melospiza melodia)
- Genome-wide SNP discovery and identification of QTL associated with agronomic traits in oil palm using genotyping-by-sequencing (GBS).
- Oil palm genome sequence reveals divergence of interfertile species in old and new worlds
- Mapping quantitative trait loci (QTLs) for fatty acid composition in an interspecific cross of oil palm
- Genome-wide discovery of gene-related SNPs in Barramundi Lates calcarifer
- Improving palm oil quality through identification and mapping of the lipase gene causing oil deterioration
- RADSeq: next-generation population genetics.
- MapChart: software for the graphical presentation of linkage maps and QTLs.
- Construction of a RFLP genetic linkage map for oil palm (Elaeis guineensis Jacq.).
- Amplification Biases and Consistent Recovery of Loci in a Double-Digest RAD-seq Protocol
- Microsatellite-based high density linkage map in oil palm (Elaeis guineensis Jacq.).
- Identification of loci governing eight agronomic traits using a GBS-GWAS approach and validation by QTL mapping in soya bean.
- High density molecular linkage maps of the tomato and potato genomes.
- Population genomic and genome-wide association studies of agroclimatic traits in sorghum
- Strategies for microsatellite isolation: a review
- Rapid isolation and characterization of microsatellites from the genome of Asian arowana (Scleropages formosus, Osteoglossidae, Pisces)
- Development of High-Density Genetic Maps for Barley and Wheat Using a Novel Two-Enzyme Genotyping-by-Sequencing Approach
- Oil palm natural diversity and the potential for yield improvement
Cited by
- Linkage-based genome assembly improvement of oil palm (Elaeis guineensis)
- Artificially designed hybrids facilitate efficient generation of high-resolution linkage maps
- Deciphering key proteins of oil palm (Elaeis guineensis Jacq.) fruit mesocarp development by proteomics and chemometrics
- Experimental validation of in silico predicted RAD locus frequencies using genomic resources and short read data from a model marine mammal
- Construction of a high-density linkage map and QTL mapping for important agronomic traits in Stylosanthes guianensis (Aubl.) Sw.
- OIL PALM ECONOMIC PERFORMANCE IN MALAYSIA AND R&D PROGRESS IN 2018
- Dissecting Resistance to Phytophthora cinnamomi in Interspecific Hybrid Chestnut Crosses Using Sequence-Based Genotyping and QTL Mapping.
- Evaluation of software to construct genetic linkage maps in plants
- LD-annot: A Bioinformatics Tool to Automatically Provide Candidate SNPs With Annotations for Genetically Linked Genes
- Genetic Mapping of the Incompatibility Locus in Olive and Development of a Linked Sequence-Tagged Site Marker
- Reduced representation approach for identification of genome-wide SNPs and their annotation for economically important traits in Indian Tharparkar cattle
- Construction of a high density linkage map in Oil Palm using SPET markers
- Candidate genes linked to QTL regions associated with fatty acid composition in oil palm
- Sequence-Related Amplified Polymorphism (SRAP) Markers Based Genetic Diversity and Population Structure Analysis of Oil Palm (Elaeis guineensis Jacq.)
- Molecular approaches for improving oil palm for oil
- The Oil Palm Genome
- Genomic Basis of Striking Fin Shapes and Colors in the Fighting Fish
- Predicting Heritability of Oil Palm Breeding Using Phenotypic Traits and Machine Learning
- Genome Mapping to Enhance Efficient Marker-Assisted Selection and Breeding of the Oil Palm (Elaeis guineensis Jacq.)
- Oil Palm Breeding in the Modern Era: Challenges and Opportunities
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