A Completely Reimplemented MPI Bioinformatics Toolkit with a New HHpred Server at its Core.
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Summary
The new version of the MPI Bioinformatics Toolkit is introduced, focusing on improved features for the comprehensive analysis of proteins, as well as on promoting teaching.
- Type
- article
- Published
- 2017-12-01
- Cited by
- 2,279
- References
- 57
- OpenAlex
- https://openalex.org/W2774178591
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:22415932
Keywords
Computer science, Pairwise comparison, Sequence alignment, Web server, Sequence analysis
References
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- Production of glycoprotein-deleted rabies viruses for monosynaptic tracing and high-level gene expression in neurons
- Kalign – an accurate and fast multiple sequence alignment algorithm
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- A combined transmembrane topology and signal peptide prediction method.
- Measuring the conformational space of square four-helical bundles with the program samCC.
- HHsenser: exhaustive transitive profile search using HMM–HMM comparison
- HHomp—prediction and classification of outer membrane proteins
- Comparative analysis of coiled-coil prediction methods.
- GeneSilico protein structure prediction meta-server
- Sequence context-specific profiles for homology searching
- SimShiftDB; local conformational restraints derived from chemical shift similarity searches on a large synthetic database
- HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment
- Domain annotation of trimeric autotransporter adhesins—daTAA
- Evolutionary trees from DNA sequences: A maximum likelihood approach
- De novo identification of highly diverged protein repeats by probabilistic consistency
- New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0.
- Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega
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- Molecular characterization of the first saltwater crocodilepox virus genome sequences from the world’s largest living member of the Crocodylia
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- PII1: a protein involved in starch initiation that determines granule number and size in Arabidopsis chloroplast
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