Robustness encoded across essential and accessory replicons in an ecologically versatile bacterium

Keywords

Biology, Extrachromosomal DNA, Replicon, Genome, Genetics

References

• Unique attributes of cyanobacterial metabolism revealed by improved genome-scale metabolic modeling and essential gene analysisE. Crezee, S.R. Tennison, A.P. Rawlinson — 2016
• A Key Regulator of the Glycolytic and Gluconeogenic Central Metabolic Pathways in Sinorhizobium melilotiCatherine Benezech — 2017
• The differential view of genotype–phenotype relationshipsVirginie Courtier‐Orgogozo, Baptiste Morizot, Arnaud Martin — 2015
• The ndvA gene product of Rhizobium meliloti is required for beta-(1----2)glucan production and has homology to the ATP-binding export protein HlyBS W Stanfield, Luis Ielpi, D. A. O’Brochta — 1988
• The ndvB locus of Rhizobium meliloti encodes a 319-kDa protein involved in the production of beta-(1----2)-glucan.Luis Ielpi, T Dylan, Gary S. Ditta — 1990
• Second symbiotic megaplasmid in Rhizobium meliloti carrying exopolysaccharide and thiamine synthesis genesTurlough M. Finan, Barbara N. Kunkel, G F De Vos — 1986
• ggplot2: Elegant Graphics for Data AnalysisPedro Valero‐Mora — 2010
• ggplot2: Elegant Graphics for Data AnalysisCedric E. Ginestet — 2011
• Evolution of Intra-specific Regulatory Networks in a Multipartite Bacterial GenomeMarco Galardini, Matteo Brilli, Giulia Spini — 2015
• Identification of essential Alphaproteobacterial genes reveals operational variability in conserved developmental and cell cycle systemsPatrick D. Curtis, Yves V. Brun — 2014
• A shotgun lipidomics study of a putative lysophosphatidic acid acyl transferase (PlsC) in Sinorhizobium meliloti.Libia Saborido Basconcillo, Rahat Zaheer, Turlough M. Finan — 2009
• Key roles of microsymbiont amino acid metabolism in rhizobia-legume interactionsMichael F. Dunn — 2015
• Genetic redundancy is prevalent within the 6.7 Mb Sinorhizobium meliloti genomeGeorge C. diCenzo, Turlough M. Finan — 2015
• On the road to synthetic life: the minimal cell and genome-scale engineeringMario Juhas — 2015
• New mini- zincin structures provide a minimal scaffold for members of this metallopeptidase superfamilyChristine B. Trame, Yuanyuan Chang, Herbert L. Axelrod — 2014
• Increased Malonyl Coenzyme A Biosynthesis by Tuning the Escherichia coli Metabolic Network and Its Application to Flavanone ProductionZachary L. Fowler, William W. Gikandi, Mattheos Koffas — 2009
• The use of transposon Tn5 mutagenesis in the rapid generation of correlated physical and genetic maps of DNA segments cloned into multicopy plasmids--a review.Frans J. de Bruijn, James R. Lupski — 1984
• A Sinorhizobium meliloti osmosensory two‐component system required for cyclic glucan export and symbiosisJoel S. Griffitts, Rebecca E. Carlyon, Jacob H. Erickson — 2008
• Transposon insertion sequencing: a new tool for systems-level analysis of microorganismsTim van Opijnen, Andrew Camilli — 2013
• Examination of Prokaryotic Multipartite Genome Evolution through Experimental Genome ReductionGeorge C. diCenzo, Allyson M. MacLean, Branislava Milunovic — 2014

Cited by

• Tn-Core: context-specific reconstruction of core metabolic models using Tn-seq dataGeorge C. diCenzo, Alessio Mengoni, Marco Fondi — 2017
• Creation and multi-omics characterization of a genomically hybrid strain in the nitrogen-fixing symbiotic bacterium Sinorhizobium melilotiAlice Checcucci, George C. diCenzo, Veronica Ghini — 2018
• Emergence and features of the multipartite genome structure of the family Burkholderiaceae revealed through comparative and evolutionary genomicsGeorge C. diCenzo, Alessio Mengoni, Elena Perrin — 2018
• Ecology and Evolution of Rhizobia: Principles and ApplicationsEn Tao Wang, Chang Fu Tian, Wen Feng Chen — 2019
• Lineage-Specific Rewiring of Core Pathways Predating Innovation of Legume Nodules Shapes Symbiotic EfficiencyWen-Jing Cui, Biliang Zhang, Ran Zhao — 2021
• Tn-Core: Functionally Interpreting Transposon-Sequencing Data with Metabolic Network Analysis.G. diCenzo, Marco Galardini, M. Fondi — 2021
• Genomics and Evolution of RhizobiaC. Tian, J. Young — 2019

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