RAZA: A Rapid 3D z-crossings algorithm to segment electron tomograms and extract organelles and macromolecules.
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Summary
RAZA (Rapid 3D z-crossings algorithm) provides a robust, accurate, intuitive, fast, and generally applicable segmentation algorithm capable of detecting organelles, membranes, macromolecular assemblies and extrinsic membrane protein domains.
- Type
- article
- Published
- 2017-10-13
- Cited by
- 3
- References
- 61
- Access
- Open access
- OpenAlex
- https://openalex.org/W2763550562
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:13350414
Keywords
Segmentation, Computer science, Tomography, Electron tomography, Algorithm
References
- Methods for segmentation and interpretation of electron tomographic reconstructions.
- Single Particle Tomography in EMAN2
- Methods for image segmentation in cellular tomography.
- Bilateral edge filter: photometrically weighted, discontinuity based edge detection.
- Recursive filtering and edge tracking: two primary tools for 3D edge detection
- Volumetric feature extraction and visualization of tomographic molecular imaging.
- Automatic particle detection through efficient Hough transforms
- Efficient automatic noise reduction of electron tomographic reconstructions based on iterative median filtering.
- Supramolecular organization of photosystem II in green plants.
- Identification of macromolecular complexes in cryoelectron tomograms of phantom cells
- Theory of edge detection
- The Laplacian of Gaussian and arbitrary z-crossings approach applied to automated single particle reconstruction.
- A differential structure approach to membrane segmentation in electron tomography.
- Three-dimensional analysis of the structure and ecology of a novel, ultra-small archaeon
- The discriminative bilateral filter: an enhanced denoising filter for electron microscopy data.
- Detecting particles in cryo-EM micrographs using learned features.
- Three-Dimensional Geometric Modeling of Membrane-bound Organelles in Ventricular Myocytes: Bridging the Gap between Microscopic Imaging and Mathematical Simulation
- The Molecular Architecture of Axonemes Revealed by Cryoelectron Tomography
- Computer visualization of three-dimensional image data using IMOD.
- Segmentation of electron tomographic data sets using fuzzy set theory principles.
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