20 years of the SMART protein domain annotation resource
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Summary
In its 20th year, the SMART analysis results pages have been streamlined again and its information sources have been updated, and the internal full text search engine has been redesigned and updated, resulting in greatly increased search speed.
- Type
- article
- Published
- 2017-10-10
- Cited by
- 1,751
- References
- 21
- Access
- Open access
- OpenAlex
- https://openalex.org/W2761688050
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:20755881
Keywords
UniProt, Ensembl, Biology, Resource (disambiguation), Domain (mathematical analysis)
References
- Profile analysis: detection of distantly related proteins.
- Recognition of functional regions in primary structures using a set of property patterns
- SMART, a simple modular architecture research tool: identification of signaling domains.
- SMART: recent updates, new developments and status in 2015
- SMART 6: recent updates and new developments
- Shuffled domains in extracellular proteins
- PTMcode v2: a resource for functional associations of post-translational modifications within and between proteins
- Hidden Markov models in computational biology. Applications to protein modeling.
- New and continuing developments at PROSITE
- Comprehensive sequence analysis of the 182 predicted open reading frames of yeast chromosome III
- Accelerated Profile HMM Searches
- UniProt: the Universal Protein knowledgebase
- PROSITE: a dictionary of sites and patterns in proteins.
- eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences
- The Pfam protein families database: towards a more sustainable future
- Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees
- The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible
- InterPro in 2017—beyond protein family and domain annotations
- PANTHER version 11: expanded annotation data from Gene Ontology and Reactome pathways, and data analysis tool enhancements
- Ensembl 2017
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- Identification and RNAi-based function analysis of chitinase family genes in diamondback moth, Plutella xylostella.
- Computational analysis of the evolutionarily conserved Missing In Metastasis/Metastasis Suppressor 1 gene predicts novel interactions, regulatory regions and transcriptional control
- The Unique Antimicrobial Recognition and Signaling Pathways in Tardigrades with a Comparison Across Ecdysozoa
- SMARCA4 mutation causes human otosclerosis and a similar phenotype in mice
- Characterization of pyrethroid resistance in the western corn rootworm Diabrotica virgifera virgifera LeConte
- Identification of a moronecidin‐like antimicrobial peptide in the venomous fish Pterois volitans: Functional and structural study of pteroicidin‐&agr;
- Sec16A, a key protein in COPII vesicle formation, regulates the stability and localization of the novel ubiquitin ligase RNF183
- Antibacterial Evaluation and Virtual Screening of New Thiazolyl-Triazole Schiff Bases as Potential DNA-Gyrase Inhibitors
- Firefly genomes illuminate parallel origins of bioluminescence in beetles
- TRANSPARENT TESTA GLABRA 1-Dependent Regulation of Flavonoid Biosynthesis
- An ancient Sec10–formin fusion provides insights into actin-mediated regulation of exocytosis
- Genome-Wide Identification, Characterization, and Expression Profiling of Glutathione S-Transferase (GST) Family in Pumpkin Reveals Likely Role in Cold-Stress Tolerance
- Reactive-site-centric chemoproteomics identifies a distinct class of deubiquitinase enzymes
- Deep mutational analysis reveals functional trade-offs in the sequences of EGFR autophosphorylation sites
- Cluster expansion of apolipoprotein D (ApoD) genes in teleost fishes
- A recombinant Fasciola gigantica 14-3-3 epsilon protein (rFg14-3-3e) modulates various functions of goat peripheral blood mononuclear cells
- Identification and Characterization of Wheat Yellow Striate Virus, a Novel Leafhopper-Transmitted Nucleorhabdovirus Infecting Wheat
- Characterization of the basic helix–loop–helix gene family and its tissue-differential expression in response to salt stress in poplar
- Structure of a novel dimeric SET domain methyltransferase that regulates cell motility
- A sequence family database built on ECOD structural domains
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