DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets.
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- Type
- article
- Published
- 2017-12-01
- Cited by
- 6,459
- References
- 25
- Access
- Open access
- OpenAlex
- https://openalex.org/W2755331695
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:6822725
Keywords
Biology, Coalescent theory, Computational biology, DNA sequencing, Locus (genetics)
References
- Bioinformatics for DNA Sequence Analysis
- Gene genealogies and the coalescent process.
- Mlcoalsim: Multilocus Coalescent Simulations
- Mutational and fitness landscapes of an RNA virus revealed through population sequencing
- Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows
- Deep Sequencing: Becoming a Critical Tool in Clinical Virology
- Statistical Tests for Detecting Positive Selection by Utilizing High-Frequency Variants
- Genome sequencing and population genomics in non-model organisms.
- Frequency Spectrum Neutrality Tests: One for All and All for One
- DnaSP, DNA sequence polymorphism: an interactive program for estimating population genetics parameters from DNA sequence data
- Anchored hybrid enrichment for massively high-throughput phylogenomics.
- Does heterozygosity estimate inbreeding in real populations?
- Ultraconserved elements anchor thousands of genetic markers spanning multiple evolutionary timescales.
- Generating samples under a Wright-Fisher neutral model of genetic variation
- High-Throughput Genomic Data in Systematics and Phylogenetics
- Demystifying the RAD fad
- DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
- Stacks: Building and Genotyping Loci De Novo From Short-Read Sequences
- Applications of next-generation sequencing to phylogeography and phylogenetics.
- Cloud-Coffee: implementation of a parallel consistency-based multiple alignment algorithm in the T-Coffee package and its benchmarking on the Amazon Elastic-Cloud
Cited by
- Mitochondrial genome sequencing of a vermivorous cone snail Conus quercinus supports the correlative analysis between phylogenetic relationships and dietary types of Conus species
- Subdividing the Common Intertidal Hermit Crab Pagurus minutus Hess, 1865 (Decapoda: Anomura: Paguridae) Based on Molecular, Morphological and Coloration Analyses.
- Genotype Shift of Malaysian Porcine Circovirus 2 (PCV2) from PCV2b to PCV2d within a Decade
- Invasion-inhibitory peptides chosen by natural selection analysis as an antimalarial strategy.
- Molecular genotyping of Echinococcus granulosus in the North of Iraq.
- Computational prediction of the phenotypic effects of genetic variants: basic concepts and some application examples in Drosophila nervous system genes
- Genetic analysis of maternal and paternal lineages in Kabardian horses by uniparental molecular markers
- Karyotype-environment associations support a role for a chromosomal inversion in local adaptation in the seaweed fly Coelopa frigida
- Investigation of the status of the enigmatic White‐chested Tinkerbird Pogoniulus makawai using molecular analysis of the type specimen
- Human cytochrome P450 2B6 genetic variability in Botswana: a case of haplotype diversity and convergent phenotypes
- Mitochondrial D-loop DNA analyses of Norway Lobster (Nephrops norvegicus) reveals genetic isolation between Atlantic and Mediterranean populations
- Genetic Diversity and Structure of Iranian Horses' Population Based on Mitochondrial Markers
- Evidence for panmixia despite barriers to gene flow in the hooked mussel, Ischadium recurvum (Mytilidae; Brachidontinae) along the North American coastline
- Ancient DNA from Giant Panda (Ailuropoda melanoleuca) of South-Western China Reveals Genetic Diversity Loss during the Holocene
- Bottlenecks in the transmission of Porcine reproductive and respiratory syndrome virus (PRRSV1) to naïve pigs and quasi-species variation during infection in partially immune pigs
- Complete Chloroplast Genome of Cercis chuniana (Fabaceae) with Structural and Genetic Comparison to Six Species in Caesalpinioideae
- Brachylaima asakawai sp. nov. (Trematoda: Brachylaimidae), a rodent intestinal fluke in Hokkaido, Japan, with a finding of the first and second intermediate hosts.
- Several Subspecies or Phenotypic Plasticity? A Geometric Morphometric and Molecular Analysis of Variability of the Mayan Cichlid Mayaheros urophthalmus in the Yucatan
- Molecular diversity of internal transcribed spacer among the monoconidial isolates of Magnaporthe oryzae isolated from rice in Southern Karnataka, India
- High Intraspecific Genetic Diversity of Nocardia brasiliensis, a Pathogen Responsible for Cutaneous Nocardiosis Found in France: Phylogenetic Relationships by Using sod and hsp65 Genes
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