MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization
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Summary
The Web interface for recently developed options for large data and interactive usage to refine sequence data sets and MSAs for multiple sequence alignment are explained.
- Type
- article
- Published
- 2017-09-06
- Cited by
- 7,822
- References
- 43
- Access
- Open access
- OpenAlex
- https://openalex.org/W2751583588
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:37390292
Keywords
Sequence (biology), Multiple sequence alignment, Computer science, Visualization, Service (business)
References
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- Assessing the utility of coevolution-based residue–residue contact predictions in a sequence- and structure-rich era
- Simple chained guide trees give poorer multiple sequence alignments than inferred trees in simulation and phylogenetic benchmarks
- PASTA: Ultra-Large Multiple Sequence Alignment for Nucleotide and Amino-Acid Sequences
- aLeaves facilitates on-demand exploration of metazoan gene family trees on MAFFT sequence alignment server with enhanced interactivity
- Simple chained guide trees give high-quality protein multiple sequence alignments
- Optimal alignment between groups of sequences and its application to multiple sequence alignment
- A general method applicable to the search for similarities in the amino acid sequence of two proteins.
- A novel randomized iterative strategy for aligning multiple protein sequences
- The neighbor-joining method: a new method for reconstructing phylogenetic trees.
- MisPred: a resource for identification of erroneous protein sequences in public databases
- Clustering of highly homologous sequences to reduce the size of large protein databases
- Adding unaligned sequences into an existing alignment using MAFFT and LAST
- Sequence embedding for fast construction of guide trees for multiple sequence alignment
- Assessment and refinement of eukaryotic gene structure prediction with gene-structure-aware multiple protein sequence alignment
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