Wedding higher taxonomic ranks with metabolic signatures coded in prokaryotic genomes
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Summary
An extensive dataset of Archaea and Bacteria is used to prove that metabolic signatures coded in their genomes are informative traits that allow to accurately classify organisms coherently to higher taxonomic ranks, and to associate functional features with the definition of taxa.
- Type
- preprint
- Published
- 2016-04-22
- Cited by
- 0
- References
- 30
- Access
- Open access
- OpenAlex
- https://openalex.org/W2338074085
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:14256943
Keywords
Taxonomy (biology), Biology, Genome, Taxonomic rank, Evolutionary biology
References
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- SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
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- Improved microbial gene identification with GLIMMER.
- Detection of Helicobacteraceae in Intestinal Biopsies of Children with Crohn’s Disease
- taxize: taxonomic search and retrieval in R
- Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya.
- Metabolic Model-Based Integration of Microbiome Taxonomic and Metabolomic Profiles Elucidates Mechanistic Links between Ecological and Metabolic Variation
- Draft Genome Sequence of a Thermophilic Cyanobacterium from the Family Oscillatoriales (Strain MTP1) from the Chalk River, Colorado
- R Development Core Team (2010): R: A language and environment for statistical computing
- Basic Local Alignment Search Tool
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