Realtime analysis and visualization of MinION sequencing data with npReader
Explore this paper's citation graph
- Type
- article
- Published
- 2016-03-01
- Cited by
- 26
- References
- 3
- Access
- Open access
- OpenAlex
- https://openalex.org/W2175151465
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:22869237
Keywords
Minion, Computer science, Nanopore sequencing, Interface (matter), Pipeline (software)
References
- Poretools: a toolkit for analyzing nanopore sequence data
- poRe: an R package for the visualization and analysis of nanopore sequencing data
- Real-time strain typing and analysis of antibiotic resistance potential using Nanopore MinION sequencing
- Streaming algorithms for identification of pathogens and antibiotic resistance potential from real-time MinION TM sequencing
Cited by
- Streaming algorithms for identification of pathogens and antibiotic resistance potential from real-time MinIONTM sequencing
- Advancements in Next-Generation Sequencing.
- Scaffolding and completing genome assemblies in real-time with nanopore sequencing
- Dynamic read mapping and online consensus calling for better variant detection
- Improvements in Genomic Technologies: Application to Crop Genomics.
- Novel computational techniques for mapping and classifying Next-Generation Sequencing data. (Nouvelles techniques informatiques pour la localisation et la classification de données de séquençage haut débit)
- Nanopore sequencing data analysis: state of the art, applications and challenges
- Same-day genomic and epigenomic diagnosis of brain tumors using real-time nanopore sequencing
- Chiron: translating nanopore raw signal directly into nucleotide sequence using deep learning
- Evaluation of Oxford Nanopore’s MinION Sequencing Device for Microbial Whole Genome Sequencing Applications
- A Nanopore Sequencing-Based Assay for Rapid Detection of Gene Fusions.
- A review of the potential of the MinION™ single‐molecule sequencing system for forensic applications
- Real-time demultiplexing Nanopore barcoded sequencing data with npBarcode
- Targeted STR and SNP in-field sequencing by Oxford Nanopore MinION™ for the identification of an individual in a military scenario
- Rapid and Cost-Efficient Enterovirus Genotyping from Clinical Samples Using Flongle Flow Cells
- Retooling phage display with electrohydrodynamic nanomixing and nanopore sequencing.
- Real-time resolution of short-read assembly graph using ONT long reads
- Evaluation of WGS performance for bacterial pathogen characterization with the Illumina technology optimized for time-critical situations
- Nanopore sequencing technology, bioinformatics and applications
- Salvia Biotechnology
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