MRBAYES: Bayesian inference of phylogenetic trees
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Summary
The program MRBAYES performs Bayesian inference of phylogeny using a variant of Markov chain Monte Carlo, and an executable is available at http://brahms.rochester.edu/software.html.
- Type
- article
- Published
- 2001-08-01
- Cited by
- 21,820
- References
- 13
- Access
- Open access
- OpenAlex
- https://openalex.org/W2161444534
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:45028408
Keywords
Markov chain Monte Carlo, Executable, Computer science, Source code, Bayesian probability
References
- Markov Chain Monte Carlo Maximum Likelihood
- Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites.
- Bayesian phylogenetic inference using DNA sequences: a Markov Chain Monte Carlo Method.
- Phylogenetic Inference for Binary Data on Dendograms Using Markov Chain Monte Carlo
- Bayesian Phylogenetic Inference via Markov Chain Monte Carlo Methods
- Phylogenetic Tree Construction Using Markov Chain Monte Carlo
- NEXUS: an extensible file format for systematic information.
- Reversible jump Markov chain Monte Carlo computation and Bayesian model determination
- Markov Chains for Exploring Posterior Distributions
- Monte Carlo Sampling Methods Using Markov Chains and Their Applications
- Markov Chasin Monte Carlo Algorithms for the Bayesian Analysis of Phylogenetic Trees
- Markov Chain Monte Carlo Algorithms for the Bayesian Analysis of Phylogenetic Trees
Cited by
- Reconstructions phylogénétiques du genre Quercus à partir de séquences du génome nucléaire et chloroplastique
- Phylogenetic Approaches to Natural Product Structure Prediction
- The Evolution of the Glucosinolate Pathway in the Brassicaceae
- A morphological analysis of weevils from sub-Antarctic Prince Edward Islands: an assessment of ecological influences
- Molecular evolution of the p53 network in reptiles
- Molecular systematics of the Eastern Fence Lizard (Sceloporus undulatus): a comparison of Parsimony, Likelihood, and Bayesian approaches.
- PHYLOGENETIC RELATIONSHIPS AND MORPHOLOGICAL DIVERSITY IN DARWIN'S FINCHES AND THEIR RELATIVES
- A phylogeny of Chinese species in the genus Phrynocephalus (Agamidae) inferred from mitochondrial DNA sequences.
- Phylogeny of Passerida (Aves: Passeriformes) based on nuclear and mitochondrial sequence data.
- The astacin protein family in Caenorhabditis elegans.
- A Narf-like gene from Cryptosporidium parvum resembles homologues observed in aerobic protists and higher eukaryotes.
- topoSNP: a topographic database of non-synonymous single nucleotide polymorphisms with and without known disease association
- Novel relationships among hyloid frogs inferred from 12S and 16S mitochondrial DNA sequences.
- Evolution of GCYC, a Gesneriaceae homolog of CYCLOIDEA, within Gesnerioideae (Gesneriaceae).
- Relict snakes of North America and their relationships within Caenophidia, using likelihood-based Bayesian methods on mitochondrial sequences.
- DNA taxonomy of a neglected animal phylum: an unexpected diversity of tardigrades
- On the evolutionary history of Ephedra: Cretaceous fossils and extant molecules.
- Recurrent evolution of herbivory in small, cold-climate lizards: breaking the ecophysiological rules of reptilian herbivory.
- Functional genomic analysis of the ADP‐ribosylation factor family of GTPases: phylogeny among diverse eukaryotes and function in C. elegans
- Putting the brakes on snake venom evolution: the unique molecular evolutionary patterns of Aipysurus eydouxii (Marbled sea snake) phospholipase A2 toxins.
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