A general framework for estimating the relative pathogenicity of human genetic variants
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Summary
The ability of CADD to prioritize functional, deleterious and pathogenic variants across many functional categories, effect sizes and genetic architectures is unmatched by any current single-annotation method.
- Type
- article
- Published
- 2014-02-02
- Cited by
- 6,008
- References
- 66
- Access
- Open access
- OpenAlex
- https://openalex.org/W2160995259
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:2593453
Keywords
Biology, Annotation, Missense mutation, Allele, Computational biology
References
- Base-calling of automated sequencer traces using phred. I. Accuracy assessment.
- SIFT: predicting amino acid changes that affect protein function
- Genome-wide nucleotide-level mammalian ancestor reconstruction.
- Linking disease associations with regulatory information in the human genome
- Analysis of 6,515 exomes reveals a recent origin of most human protein-coding variants
- Optimized Cutting Plane Algorithm for Large-Scale Risk Minimization
- Some probabilistic and statistical problems in the analysis of DNA sequences
- MLL2 mutation detection in 86 patients with Kabuki syndrome: a genotype–phenotype study
- The neutral theory of molecular evolution
- Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations
- Recessive mutations in a distal PTF1A enhancer cause isolated pancreatic agenesis
- Improving the assessment of the outcome of nonsynonymous SNVs with a consensus deleteriousness score, Condel.
- Evolution and Functional Impact of Rare Coding Variation from Deep Sequencing of Human Exomes
- Massively parallel functional dissection of mammalian enhancers in vivo
- One-stop shop for disease genes
- Architecture of the human regulatory network derived from ENCODE data
- Genome-wide inference of natural selection on human transcription factor binding sites
- ENCODE whole-genome data in the UCSC Genome Browser: update 2012
- Trait-Associated SNPs Are More Likely to Be eQTLs: Annotation to Enhance Discovery from GWAS
- Patterns and rates of exonic de novo mutations in autism spectrum disorders
Cited by
- Computational methods for identification of disease-associated variations in exome sequencing
- Disease genetics: All together now for variant interpretation
- Targeted next-generation sequencing panels for monogenetic disorders in clinical diagnostics: the opportunities and challenges
- Rare variant association studies: considerations, challenges and opportunities
- Novel SCN10A variants associated with Brugada syndrome.
- Two Novel De Novo GARS Mutations Cause Early-Onset Axonal Charcot-Marie-Tooth Disease
- Rare variant discovery by deep whole-genome sequencing of 1,070 Japanese individuals
- A de novo whole gene deletion of XIAP detected by exome sequencing analysis in very early onset inflammatory bowel disease: a case report
- Haplotyping germline and cancer genomes using high-throughput linked-read sequencing
- Cytosolic phosphoenolpyruvate carboxykinase deficiency presenting with acute liver failure following gastroenteritis.
- Exome Sequencing and the Management of Neurometabolic Disorders
- The role of small in-frame insertions/deletions in inherited eye disorders and how structural modelling can help estimate their pathogenicity
- Clonal and microclonal mutational heterogeneity in high hyperdiploid acute lymphoblastic leukemia
- Charcot-Marie-Tooth gene, SBF2, associated with taxane-induced peripheral neuropathy in African Americans
- Landscape of warfarin and clopidogrel pharmacogenetic variants in Qatari population from whole exome datasets.
- Somatic Mutation Patterns in Hemizygous Genomic Regions Unveil Purifying Selection during Tumor Evolution
- Comprehensive Computational Analysis of GWAS Loci Identifies CCR2 as a Candidate Gene for Celiac Disease Pathogenesis
- Germline SAMD9 Mutation in Siblings with Monosomy 7 and Myelodysplastic Syndrome
- CAGI4 Crohn’s exome challenge: Marker SNP versus exome variant models for assigning risk of Crohn disease
- Korean Variant Archive (KOVA): a reference database of genetic variations in the Korean population
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