A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species
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Summary
A procedure for constructing GBS libraries based on reducing genome complexity with restriction enzymes (REs) is reported, which is simple, quick, extremely specific, highly reproducible, and may reach important regions of the genome that are inaccessible to sequence capture approaches.
- Type
- article
- Published
- 2011-05-04
- Cited by
- 6,067
- References
- 37
- Access
- Open access
- OpenAlex
- https://openalex.org/W2159474015
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:15213678
Keywords
Biology, Genome, Genotyping, Reference genome, Genetics
References
- Genome-wide variation in the human and fruitfly: a comparison.
- Expanding the genetic map of maize with the intermated B73 × Mo17 (IBM) population
- Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex
- A First-Generation Haplotype Map of Maize
- IDENTIFICATION OF GENETIC VARIANTS USING BARCODED MULTIPLEXED SEQUENCING
- Molecular mapping of the Oregon Wolfe Barleys: a phenotypically polymorphic doubled-haploid population
- An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment
- Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.)
- High-throughput genotyping by whole-genome resequencing.
- Accurate Whole Human Genome Sequencing using Reversible Terminator Chemistry
- The B73 Maize Genome: Complexity, Diversity, and Dynamics
- Molecular and functional diversity of maize.
- Paramutation in maize: RNA mediated trans-generational gene silencing
- Structure of linkage disequilibrium and phenotypic associations in the maize genome
- Conserved noncoding genomic sequences associated with a flowering-time quantitative trait locus in maize
- Organization and variability of the maize genome.
- A distant upstream enhancer at the maize domestication gene tb1 has pleiotropic effects on plant and inflorescent architecture
- Genetic Properties of the Maize Nested Association Mapping Population
- Maize Inbreds Exhibit High Levels of Copy Number Variation (CNV) and Presence/Absence Variation (PAV) in Genome Content
- Multiplex sequencing of plant chloroplast genomes using Solexa sequencing-by-synthesis technology
Cited by
- Next Generation Population Genomics in the Guppy (Poecilia reticulata)
- Genetics of flystrike, dagginess and associated traits in New Zealand dual-purpose sheep : a thesis presented in partial fulfilment of the requirements for the degree of Doctor of Philosophy in Animal Science at Massey University, Palmerston North, New Zealand
- Genome‐wide association genetics of an adaptive trait in lodgepole pine
- Maximizing the Reliability of Genomic Selection by Optimizing the Calibration Set of Reference Individuals: Comparison of Methods in Two Diverse Groups of Maize Inbreds (Zea mays L.)
- Population genomics based on low coverage sequencing: how low should we go?
- Molecular markers for genetics and plant breeding: the MFLP marker system and its application in narrow-leafed lupin (Lupinus angustifolius).
- The restriction enzyme target approach to genotyping by sequencing (GBS).
- Molecular Markers and Cotton Genetic Improvement: Current Status and Future Prospects
- High-Resolution Linkage Map and Chromosome-Scale Genome Assembly for Cassava (Manihot esculenta Crantz) from 10 Populations
- A high-density genetic map of cucumber derived from Specific Length Amplified Fragment sequencing (SLAF-seq)
- Prediction accuracies for growth and wood attributes of interior spruce in space using genotyping-by-sequencing
- Inheritance and Identification of a Major Quantitative Trait Locus (QTL) that Confers Resistance to Meloidogyne incognita and a Novel QTL for Plant Height in Sweet Sorghum.
- Identification of candidate genes for dissecting complex branch number trait in chickpea.
- Recurrent selection explains parallel evolution of genomic regions of high relative but low absolute differentiation in a ring species
- Structural variation in the maize genome
- Combining Image Analysis, Genome Wide Association Studies and Different Field Trials to Reveal Stable Genetic Regions Related to Panicle Architecture and the Number of Spikelets per Panicle in Rice
- Genome-Wide Differentiation of Various Melon Horticultural Groups for Use in GWAS for Fruit Firmness and Construction of a High Resolution Genetic Map
- Genome‐Wide Association Mapping of Fusarium Head Blight Resistance in Wheat using Genotyping‐by‐Sequencing
- Genetic Gain and Inbreeding from Genomic Selection in a Simulated Commercial Breeding Program for Perennial Ryegrass
- A second generation SNP and SSR integrated linkage map and QTL mapping for the Chinese mitten crab Eriocheir sinensis
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