SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny
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Summary
SEAVIEW and PHYLO_WIN are two graphic tools for X Windows-Unix computers dedicated to sequence alignment and molecular phylogenetics.
- Type
- article
- Published
- 1996-12-01
- Cited by
- 2,382
- References
- 27
- Access
- Open access
- OpenAlex
- https://openalex.org/W2149160071
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:15968683
Keywords
Phylogenetic tree, Multiple sequence alignment, Sequence (biology), Phylogenetics, Computer science
References
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- Phylogenetic position of foraminifera inferred from LSU rRNA gene sequences.
- Inferring phylogenies from DNA sequences of unequal base compositions.
- Improved tools for biological sequence comparison.
- Recovering a tree from the leaf colourations it generates under a Markov model
- CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP
- The genetic data environment an expandable GUI for multiple sequence analysis
- Multiple aligned sequence editor (MASE).
- Reconstructing evolutionary trees from DNA and protein sequences: paralinear distances.
- The neighbor-joining method: a new method for reconstructing phylogenetic trees.
- fastDNAmL: a tool for construction of phylogenetic trees of DNA sequences using maximum likelihood
- CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.
- Estimation of evolutionary distance between nucleotide sequences.
- The jackknife, the bootstrap, and other resampling plans
- Toward Defining the Course of Evolution: Minimum Change for a Specific Tree Topology
- A statistical test of phylogenies estimated from sequence data.
- Evolution of Protein Molecules
- Database on the structure of small ribosomal subunit RNA
- Database on the structure of large ribosomal subunit RNA.
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- Specialization of the entomopathogenic nematode Steinernema scapterisci with its mutualistic Xenorhabdus symbiont
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- Medusozoan phylogeny and character evolution clarified by new large and small subunit rDNA data and an assessment of the utility of phylogenetic mixture models.
- Reactivation of ancestral strains of HIV-1 in the gp120 V3 env region in patients failing antiretroviral therapy and subjected to structured treatment interruption.
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- Hellea balneolensis gen. nov., sp. nov., a prosthecate alphaproteobacterium from the Mediterranean Sea.
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