Introducing the bipartite Package: Analysing Ecological Networks

Keywords

Trophic level, Ecological network, Bipartite graph, Ecology, Pollination

References

• Measuring specialization in species interaction networksNico Blüthgen, Florian Menzel, Nils Blüthgen — 2006
• Tolerance of pollination networks to species extinctionsJane Memmott, Nickolas M. Waser, Mary V. Price — 2004
• Habitat modification alters the structure of tropical host–parasitoid food websJason M. Tylianakis, Teja Tscharntke, Owen T. Lewis — 2007
• Functional cartography of complex metabolic networksRoger Guimerà, Luı́s A. Nunes Amaral — 2005
• Networks in ecologyJordi Bascompte — 2007
• Ecological networks and their fragilityJosé M. Montoya, Stuart L. Pimm, Ricard V. Solé — 2006
• Invariant properties in coevolutionary networks of plant-animal interactionsPedro Jordano, Jordi Bascompte, Jens M. Olesen — 2002
• Collective dynamics of ‘small-world’ networksDuncan J. Watts, Steven H. Strogatz — 1998
• Structure in plant–animal interaction assemblagesThomas M. Lewinsohn, Paulo Inácio Prado, Pedro Jordano — 2006
• Specialization, constraints, and conflicting interests in mutualistic networks.Nico Blüthgen, Florian Menzel, Thomas Hovestadt — 2007
• Hierarchical structure and the prediction of missing links in networksAaron Clauset, Cristopher Moore, M. E. J. Newman — 2008
• NULL MODEL ANALYSES OF SPECIALIZATION IN PLANT–POLLINATOR INTERACTIONSDiego P. Vázquez, Marcelo A. Aizen — 2003
• Food webs.Robert M. May — 1983
• Pajek - Analysis and Visualization of Large NetworksV. Batagelj, Andrej Mrvar — 2004

Cited by

• The modularity of seed dispersal: differences in structure and robustness between bat– and bird–fruit networksOlaf Eisen, William D. Harrison, C. F. Raymond — 2011
• Land-use intensity and host plant identity interactively shape communities of arbuscular mycorrhizal fungi in roots of grassland plants.Yoong Choon Chang, Sze Wei Lee, Ryoichi Komiya — 2015
• Geothermal soil ecology in Yellowstone National ParkJames Meadow — 2012
• Seed dispersal mutualisms and plant regeneration in New Zealand alpine ecosystemsLaura Young — 2012
• Frugivorous mutualisms in a native New Zealand forest : the good the bad and the uglyArchie MacFarlane — 2012
• Scale- and trait dependent responses of bird communties to lowland rainforest restoration and frugivore-bird-seed interaction networks in Sumatra, IndonesiaWilliam Marthy — 2014
• Honeybee declines in a changing landscape: interactive effects of honeybee declines and land-use intensification on pollinator communitiesSimon A Litchwark — 2013
• Behaviour and physiology of root herbivoresS. Johnson, I. Hiltpold, C. Ted — 2013
• Butterfly diversity, habitat and vegetation usage in Hong Kong urban parksKin Chung Tam, Timothy C. Bonebrake — 2016
• Seed Dispersal and Regeneration in a Tanzanian RainforestCarrie E Seltzer — 2013
• Thirty years of use of multivariate quantitative methods in benthic community ecology of marine and coastal habitats: looking to the past to planning the futureGilson Correia de Carvalho, Raymundo José de Sá-Neto, Francisco Barros — 2015
• Trait-mediated interaction leads to structural emergence in mutualistic networksHenintsoa Onivola Minoarivelo, Cang Hui — 2016
• Interaction patterns and specialization in a local and national Norwegian pollination networkSindre Fonkalsrud — 2014
• Can we predict indirect interactions from quantitative food webs?--an experimental approach.Ayco J. M. Tack, Sofia Gripenberg, Tomas Roslin — 2011
• Seed dispersal interactions in the Mediterranean Region: contrasting patterns between islands and mainlandAarón González‐Castro, Anna Traveset, Manuel Nogales — 2012
• Diversidad, ecología y conservación de insectos saproxílicos (Coleoptera y Diptera: Syrphidae) en oquedades arbóreas del Parque Nacional de Cabañeros (España)Javier Quinto — 2013
• African mammals, foodwebs, and coexistenceDavid Tilman, Elizabeth T. Borer — 2015
• Shrinking by numbers: landscape context affects the species composition but not the quantitative structure of local food webs.Riikka Kaartinen, Tomas Roslin — 2011
• Bat-Fruit Interactions Are More Specialized in Shaded-Coffee Plantations than in Tropical Mountain Cloud Forest FragmentsJesús R. Hernández‐Montero, Romeo A. Saldaña‐Vázquez, Jorge Galindo‐González — 2015
• Network topology: patterns and mechanisms in plant-herbivore and host-parasitoid food webs.Luciano Cagnolo, Adriana Salvo, Graciela Valladares — 2011

Related papers

• vegan: Community Ecology PackageJari Oksanen, Gavin L. Simpson, F. Guillaume Blanchet — 2001
• R: A language and environment for statistical computing.R Core Team — 2014
• The nested assembly of plant–animal mutualistic networksJordi Bascompte, Pedro Jordano, Carlos J. Melián — 2003
• Indices, Graphs and Null Models: Analyzing Bipartite Ecological NetworksCarsten F. Dormann, Jochen Fründ, Nico Blüthgen — 2009
• A consistent metric for nestedness analysis in ecological systems: reconciling concept and measurementMário Almeida‐Neto, Paulo R. Guimarães, Paulo R. Guimarães — 2008
• Asymmetric Coevolutionary Networks Facilitate Biodiversity MaintenanceJordi Bascompte, Pedro Jordano, Jens M. Olesen — 2006
• Specialization, constraints, and conflicting interests in mutualistic networks.Nico Blüthgen, Florian Menzel, Thomas Hovestadt — 2007
• What do interaction network metrics tell us about specialization and biological traits?Nico Blüthgen, Jochen Fründ, Diego P. Vázquez — 2008
• Stability of Ecological Communities and the Architecture of Mutualistic and Trophic NetworksÉlisa Thébault, Colin Fontaine — 2010