Bayesian phylogenetic model selection using reversible jump Markov chain Monte Carlo.
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Summary
The reversible jump Markov chain Monte Carlo algorithm described here allows estimation of phylogeny (and other phylogenetic model parameters) to be performed while accounting for uncertainty in the model of DNA substitution.
- Type
- article
- Published
- 2004-02-12
- Cited by
- 536
- References
- 67
- Access
- Open access
- OpenAlex
- https://openalex.org/W2142258617
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:6510027
Keywords
Akaike information criterion, Bayesian information criterion, Reversible-jump Markov chain Monte Carlo, Bayes factor, Model selection
References
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- Phylogenetic methods come of age: testing hypotheses in an evolutionary context.
- MODELTEST: testing the model of DNA substitution
- The root of angiosperm phylogeny inferred from duplicate phytochrome genes.
Cited by
- A simple hierarchical approach to modeling distributions of substitution rates.
- A molecular phylogeny of the marine mussel genus Perna (Bivalvia: Mytilidae) based on nuclear (ITS1&2) and mitochondrial (COI) DNA sequences.
- Molecular systematics and biogeography of Nicrophorus in part--the investigator species group (Coleoptera: Silphidae) using mixture model MCMC.
- Model Averaging and Bayes Factor Calculation of Relaxed Molecular Clocks in Bayesian Phylogenetics
- READING COMPREHENSION COMPONENT PROCESSES IN EARLY ADOLESCENCE
- Complecto errorem: Embracing Uncertainty in Molecular Phylogenetic Analysis.
- Reconciling gene family evolution and species evolution
- Les méthodes probabilistes en phylogénie moléculaire : (2) L'approche bayésienne
- Classification of phylogenetic data via Bayesian mixture modelling
- Residue coevolution: modeling and interpretation
- Using the Birth-Death Process to Infer Changes in the Pattern of Lineage Gain and Loss
- Phylogeny, Evolution and Classification of Gall Wasps: The Plot Thickens
- Molecular systematics of Abelmoschus (Malvaceae) and genetic diversity within the cultivated species of this genus based on nuclear ITS and chloroplast rpL16 sequence data
- Comparative molecular species delimitation in the charismatic Nawab butterflies (Nymphalidae, Charaxinae, Polyura).
- USE OF MOLECULAR TECHNIQUES TO ADDRESS THE EVOLUTION OF DISPLAY TRAITS IN THE PTILONORHYNCHIDAE AND OTHER PASSERIFORM SPECIES
- Taxonomy, systematics and biogeography of the Scaritinae (Insecta, Coleoptera, Carabidae)
- A new species group in Megaselia, the lucifrons group, with description of a new species (Diptera, Phoridae)
- New insights into the evolutionary history of Gnetum (Gnetales)
- Variação cromatica, morfologica e molecular em Brachycephalus da Serra do Mar no Estado do Parana (Amphibia: Brachycephalidae)
- Finding the right balance between groundwater model complexity and experimental effort via Bayesian model selection
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