CGHnormaliter: a Bioconductor package for normalization of array CGH data with many CNAs
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Summary
CGHnormaliter is a package for normalization of array comparative genomic hybridization (aCGH) data that effectively eliminates the influence of imbalanced copy numbers and leads to a more reliable assessment of copy number alterations (CNAs).
- Type
- article
- Published
- 2010-05-15
- Cited by
- 9
- References
- 9
- Access
- Open access
- OpenAlex
- https://openalex.org/W2135678793
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:31689344
Keywords
Bioconductor, Normalization (sociology), R package, Computer science, Comparative genomic hybridization
References
- Normalization of array-CGH data: influence of copy number imbalances
- Supervised Lowess normalization of comparative genome hybridization data – application to lactococcal strain comparisons
- CGHcall: calling aberrations for array CGH tumor profiles
- Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation.
- A faster circular binary segmentation algorithm for the analysis of array CGH data
- CGHnormaliter: an iterative strategy to enhance normalization of array CGH data with imbalanced aberrations
- A probe-density-based analysis method for array CGH data: simulation, normalization and centralization
- Identification of cryptic aberrations and characterization of translocation breakpoints using array CGH in high hyperdiploid childhood acute lymphoblastic leukemia
- CGHcall: Calling aberrations for array CGH tumor profiles.
Cited by
- Digital transcriptome profiling of normal and glioblastoma-derived neural stem cells identifies genes associated with patient survival
- Applications of array-CGH for lung cancer.
- Quantitative analysis of p53 expression in human normal and cancer tissue microarray with global normalization method.
- Genetic network regulating variation in vegetative phase change in maize
- Molecular Characterization of Male Breast Cancer
- Fluxes of Life: Bioinformatics for Metabolic Flux Quantification in Isotopic Non-Steady-State
- New quality measure for SNP array based CNV detection
- Bioconductor Annual Report 2011
- CGHnormaliter Package (Version 1.28.0)
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