SequenceMatrix: concatenation software for the fast assembly of multi‐gene datasets with character set and codon information
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- Type
- article
- Published
- 2011-04-01
- Cited by
- 2,360
- References
- 32
- Access
- Open access
- OpenAlex
- https://openalex.org/W2131473084
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:85782299
Keywords
GenBank, ASCII, Software, Gene, Computer science
References
- MacClade 4: analysis of phy-logeny and character evolution
- TaxMan: a taxonomic database manager
- The use of mean instead of smallest interspecific distances exaggerates the size of the "barcoding gap" and leads to misidentification.
- Molecular phylogeny of the Calyptratae (Diptera: Cyclorrhapha) with an emphasis on the superfamily Oestroidea and the position of Mystacinobiidae and McAlpine's fly
- Convergent evolution of eye ultrastructure and divergent evolution of vision‐mediated predatory behaviour in jumping spiders
- Sensitivity analysis, molecular systematics and natural history evolution of Scathophagidae (Diptera: Cyclorrhapha: Calyptratae)
- A phylogenetic analysis of Coelopidae (Diptera) based on morphological and DNA sequence data.
- SCaFoS: a tool for Selection, Concatenation and Fusion of Sequences for phylogenomics
- A cladistic analysis of Diopsidae (Diptera) based on morphological and DNA sequence data
- Morphology versus molecules: the phylogenetic relationships of Sepsidae (Diptera: Cyclorrhapha) based on morphology and DNA sequence data from ten genes
- The phylogeny and evolution of host choice in the Hippoboscoidea (Diptera) as reconstructed using four molecular markers.
- Cryptic genetic diversity in "widespread" Southeast Asian bird species suggests that Philippine avian endemism is gravely underestimated.
- More evidence for pervasive paraphyly in scleractinian corals: systematic study of Southeast Asian Faviidae (Cnidaria; Scleractinia) based on molecular and morphological data.
- Secondarily reduced foreleg armature in Perochaeta dikowi sp.n. (Diptera: Cyclorrhapha: Sepsidae) due to a novel mounting technique
- From kissing to belly stridulation: comparative analysis reveals surprising diversity, rapid evolution, and much homoplasy in the mating behaviour of 27 species of sepsid flies (Diptera: Sepsidae)
- Evolution of life history traits in Asian freshwater prawns of the genus Macrobrachium (Crustacea: Decapoda: Palaemonidae) based on multilocus molecular phylogenetic analysis.
- Broad phylogenomic sampling improves resolution of the animal tree of life
- NEXUS: an extensible file format for systematic information.
- DNA barcoding and taxonomy in Diptera: a tale of high intraspecific variability and low identification success.
- Phylogenetic analysis of Themira (Sepsidae: Diptera): sensitivity analysis, alignment, and indel treatment in a multigene study
Cited by
- A revision of the New World species of Cremnops Förster (Hymenoptera: Braconidae: Agathidinae).
- Oceanic dispersal, vicariance and human introduction shaped the modern distribution of the termites Reticulitermes, Heterotermes and Coptotermes
- Mitochondrial Genome of Prasinophyte Alga Pyramimonas parkeae
- The coralline genera Sporolithon and Heydrichia (Sporolithales, Rhodophyta) clarified by sequencing type material of their generitypes and other species
- Plastid and mitochondrial genomes of Coccophora langsdorfii (Fucales, Phaeophyceae) and the utility of molecular markers
- Species and hybrids in the genus Diaphanosoma Fischer, 1850 (Crustacea: Branchiopoda: Cladocera).
- Molecular phylogeny of Entomobrya (Collembola: Entomobryidae) from China: Color pattern groups and multiple origins
- Molecular phylogeny and comparative morphology indicate that odontostomatids (Alveolata, Ciliophora) form a distinct class-level taxon related to Armophorea.
- Molecular and Morphological Diversity of the Oxymonad Genera Monocercomonoides and Blattamonas gen. nov.
- [Genetic characterization of varicella Zoster virus isolated from complicated clinical cases in Peru in 2016 and 2017].
- Effects of Different Pretreatments of DNA Extraction from Dried Specimens of Ladybird Beetles (Coleoptera: Coccinellidae)
- A customized nuclear target enrichment approach for developing a phylogenomic baseline for Dioscorea yams (Dioscoreaceae)
- Molecular Epidemiology and Evolution of Influenza A(H1N1) pdm09 Virus in Kenya
- Multigene sequence-based identification of Colletotrichum cymbidiicola, C. karstii and C. phyllanthi from India
- Towards an Integrative Morpho-molecular Classification of the Collodaria (Polycystinea, Radiolaria).
- Molecular phylogeny of the Taeniapterini (Diptera: Micropezidae) using nuclear and mitochondrial DNA, with a reclassification of the genus Taeniaptera Macquart
- The Evolution of an Annual Life Cycle in Killifish: Adaptation to Seasonally Ephemeral Aquatic Habitat Across Two Continents
- Phylogenetic relationships among the subfamilies of Dryinidae (Hymenoptera, Chrysidoidea) as reconstructed by molecular sequencing
- Morphogenetic characterisation, date of divergence, and evolutionary relationships of malaria vectors Anopheles cruzii and Anopheles homunculus.
- Towards a comprehensive phylogeny of the large temperate genus Pedicularis (Orobanchaceae), with an emphasis on species from the Himalaya-Hengduan Mountains
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