geomorph: an r package for the collection and analysis of geometric morphometric shape data
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Summary
This work introduces geomorph: a software package for performing geometric morphometric shape analysis in the r statistical computing environment, and includes routines for examining variation in shape space, visualizing allometric trajectories, comparing specific shapes to one another and for plotting phylogenetic changes in morphospace.
- Type
- article
- Published
- 2013-04-01
- Cited by
- 1,986
- References
- 46
- Access
- Open access
- OpenAlex
- https://openalex.org/W2128971747
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:14519226
Keywords
Morphometrics, Landmark, Superimposition, Shape analysis (program analysis), Geometric shape
References
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- Geometric morphometrics for biologists : a primer
- Morphological convergence of shell shape in distantly related scallop species (Mollusca: Pectinidae)
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- Evolutionary patterns and processes in the radiation of phyllostomid bats
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- Generalized procrustes analysis
- Extensions of the Procrustes Method for the Optimal Superimposition of Landmarks
- Shape Statistics: Procrustes Superimpositions and Tangent Spaces
- Quantitative Genetics and Evolution of Head Shape in Plethodon Salamanders
- Comparing frontal cranial profiles in archaic and modern Homo by morphometric analysis
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- Ontogenetic convergence and evolution of foot morphology in European cave salamanders (Family: Plethodontidae)
- A General Framework for the Analysis of Phenotypic Trajectories in Evolutionary Studies
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- SHAPE ANALYSIS OF SYMMETRIC STRUCTURES: QUANTIFYING VARIATION AMONG INDIVIDUALS AND ASYMMETRY
- The Gavialis–Tomistoma debate: the contribution of skull ontogenetic allometry and growth trajectories to the study of crocodylian relationships
Cited by
- Exploring Eucladoceros Ecomorphology Using Geometric Morphometrics
- Functional Morphology of the Neandertal Scapular Glenoid Fossa
- Phylogenetic Comparative Methods for Evaluating the Evolutionary History of Function-Valued Traits.
- Are Cranial Biomechanical Simulation Data Linked to Known Diets in Extant Taxa? A Method for Applying Diet-Biomechanics Linkage Models to Infer Feeding Capability of Extinct Species
- Pollinators show flower colour preferences but flowers with similar colours do not attract similar pollinators.
- Assessing reproductive isolation using a contact zone between parapatric lake‐stream stickleback ecotypes
- On growth and form in the "computer era": from geometric to biological morphometrics
- SPECIES DISCRIMINATION, SYSTEMATICS, AND ONTOGENY OF BLASTOIDEA
- Log-Shape Ratios, Procrustes Superimposition, Elliptic Fourier Analysis: Three Worked Examples in R
- Taxonomic assessment of Culicoides brunnicans, C. santonicus and C. vexans (Diptera: Ceratopogonidae) in France: Implications in systematics.
- Flying in the face of nutritional variability: modeling the origins and consequences of phenotypic plasticity using Drosophila melanogaster
- Missing the third dimension in geometric morphometrics: how to assess if 2D images really are a good proxy for 3D structures?
- The Role of Evolutionary Integration in the Morphological Evolution of the Skull of Caviomorph Rodents (Rodentia: Hystricomorpha)
- Functional Integration of the Hominin Forelimb
- Cranial ontogenetic variation in early saurischians and the role of heterochrony in the diversification of predatory dinosaurs
- Patriline Differences Reveal Genetic Influence on Forewing Size and Shape in a Yellowjacket Wasp (Hymenoptera: Vespidae: Vespula flavopilosa Jacobson, 1978)
- Geometric morphometric analysis of Setaria italica (L.) P. Beauv. (foxtail millet) and Brachiaria ramosa (L.) Stapf. (browntop millet) and its implications for understanding the biogeography of small millets
- Head, Body and Fins: Patterns of Morphological Integration and Modularity in Fishes
- Ecomorphology of Carnivora challenges convergent evolution
- Modèle de développement et évolution du patron dentaire chez les rongeurs actuels et fossiles : radiation adaptative et émergence de phénotype : le cas des Arvicolinae (Rodentia)
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