Development of a Universal Microarray Based on the Ligation Detection Reaction and 16S rRNA Gene Polymorphism To Target Diversity of Cyanobacteria
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Summary
The universal array method shows great potential for rapid and reliable identification of cyanobacteria and can be easily adapted to future development and could be applied both in research and environmental monitoring.
- Type
- article
- Published
- 2004-12-01
- Cited by
- 130
- References
- 36
- Access
- Open access
- OpenAlex
- https://openalex.org/W2118867520
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:9726281
Keywords
Biology, Cyanobacteria, Anabaena, Aphanizomenon, Microcystis
References
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- Origin and Phylogeny of Microbes Living in Permanent Antarctic Lake Ice
- Süsswasserflora von Mitteleuropa
- Molecular diversity of Microcystis strains (Cyanophyceae, Chroococcales) based on 16S rDNA sequences
- Tangential flow filtration and preliminary phylogenetic analysis of marine picoplankton
- A microsphere-based assay for multiplexed single nucleotide polymorphism analysis using single base chain extension.
- Direct Detection of 16S rRNA in Soil Extracts by Using Oligonucleotide Microarrays
- Design and evaluation of oligonucleotide-microarray method for the detection of human intestinal bacteria in fecal samples.
- Polymorphism analysis within the HLA‐A locus by universal oligonucleotide array
- Marine cyanobacteria—a prolific source of natural products
- DGGE/TGGE a method for identifying genes from natural ecosystems.
- Isolation and direct complete nucleotide determination of entire genes. Characterization of a gene coding for 16S ribosomal RNA.
- The neighbor-joining method: a new method for reconstructing phylogenetic trees.
- Cyanobacterial Diversity in Natural and Artificial Microbial Mats of Lake Fryxell (McMurdo Dry Valleys, Antarctica): a Morphological and Molecular Approach
- Fluorescent detection of cyanobacterial DNA using bacterial magnetic particles on a MAG-microarray.
- CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.
- Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis.
- Universal DNA microarray method for multiplex detection of low abundance point mutations.
- Oligonucleotide Microarray for 16S rRNA Gene-Based Detection of All Recognized Lineages of Sulfate-Reducing Prokaryotes in the Environment
- Optimization Strategies for DNA Microarray-Based Detection of Bacteria with 16S rRNA-Targeting Oligonucleotide Probes
Cited by
- Emerging high throughput analyses of cyanobacterial toxins and toxic cyanobacteria.
- Divergence Analysis of 16S rRNA and rpoB Gene Sequences Revealed from the Harmful Cyanobacterium Microcystis aeruginosa
- PCR/LDR/Universal Array Platforms for the Diagnosis of Infectious Disease
- Metagenomic trajectory of gut microbiome in the human lifespan
- Caractérisation des communautés procaryotiques impliquées dans la bioremédiation d'un sol pollué par des hydrocarbures et développement d'outils d'analyse à haut débit : les biopuces ADN
- The Role of Viral Systems in Nutrient Cycling
- Characterization of novel probiotics and prebiotics
- Molecular methods: chip assay and quantitative real-time PCR: in detecting hepatotoxic cyanobacteria.
- International guidance manual for the management of toxic cyanobacteria.
- New strategies for the accurate identification and detection of plant pathogens
- Microbial diversity in the municipal composting process and development of detection methods
- Analysis of RNA Polymerase Beta Subunit (rpoB) Gene Sequences for the Discrimination of Cyanobacteria Anabaena Species
- The use of microarrays in microbial ecology
- Detecting unknown sequences with DNA microarrays: explorative probe design strategies.
- Characterisation of diverse microbial communities and application of novel detection techniques
- Evolution and detection of cyanobacterial hepatotoxin synthetase genes
- Cyanobacterial diversity in Salar de Huasco, a high altitude saline wetland in northern Chile: an example of geographical dispersion?
- The origin of cyanobacteria in Antarctic sea ice: marine or freshwater?
- Unbalance of intestinal microbiota in atopic children
- A tool based on Ligation Detection Reaction-Universal Array (LDR-UA) for the characterization of VTEC by identification of virulence-associated and serogroup-specific genes.
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