Evolutionary divergence plots of homologous proteins.

Keywords

Divergence (linguistics), Sequence (biology), Protein superfamily, Matrix (chemical analysis), Conserved sequence

References

• Structure of crystalline -chymotrypsin. II. A preliminary report including a hypothesis for the activation mechanism.Paul B. Sigler, D. M. Blow, Brian W. Matthews — 1968
• Establishing homologies in protein sequences.M. O. Dayhoff, Winona C. Barker, Lois T. Hunt — 1983
• A strategy for the rapid multiple alignment of protein sequences. Confidence levels from tertiary structure comparisons.Geoffrey J. Barton, Michael J.E. Sternberg — 1987
• Determinants of a protein fold. Unique features of the globin amino acid sequences.Donald Bashford, Cyrus Chothia, Arthur M. Lesk — 1987
• Amino acid substitutions in structurally related proteins. A pattern recognition approach. Determination of a new and efficient scoring matrix.J.L. Risler, Marie-Odile Delorme, H. Delacroix — 1988
• Structure of crystalline -chymotrypsin. V. The atomic structure of tosyl- -chymotrypsin at 2 A resolution.Jens J. Birktoft, D. M. Blow — 1972
• A fast and sensitive multiple sequence alignment algorithmMartin Vingron, Patrick Argos — 1989
• Profile analysis: detection of distantly related proteins.Michael Gribskov, A. McLachlan, David Eisenberg — 1987
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• Multiple sequence alignment.David Bacon, W.F. Anderson — 1986
• The protein identification resource (PIR).Kathryn E. Sidman, David G. George, W. C. Barker — 1986
• Prediction of protein secondary structure and active sites using the alignment of homologous sequences.Marketa Zvelebil, Geoffrey J. Barton, William R. Taylor — 1987
• A multiple sequence alignment programEric M. Sobel, Hugo M. Martínez — 1986
• Structure of Hen Egg-White Lysozyme: A Three-dimensional Fourier Synthesis at 2 Å ResolutionC. C. F. Blake, D. F. Koenig, G. A. Mair — 1965
• A tool for multiple sequence alignment.David J. Lipman, Stephen F. Altschul, John Kececioglu — 1989
• The classification of amino acid conservation.William R. Taylor — 1986
• Similar amino acid sequences: chance or common ancestry?Russell F. Doolittle — 1981
• A comprehensive set of sequence analysis programs for the VAXJohn Devereux, Paul Haeberli, Oliver Smithies — 1984
• Comparative model-building of the mammalian serine proteases.Jonathan Greer — 1981
• Multiple sequence alignment with hierarchical clustering.F. Corpet — 1988

Cited by

• Identification of functional residues and secondary structure from protein multiple sequence alignment.Craig D. Livingstone, Geoffrey J. Barton — 1996
• A data‐base of chromosome III of Saccharomyces cerevisiaePiotr P. Słonimski, Sophie Brouillet — 1993
• An analysis of the sequence of part of the right arm of chromosome II of S. cerevisiae reveals new genes encoding an amino-acid permease and a carboxypeptidaseF. Nasr, A. -M. Bécam, Ewa A. Grzybowska — 1994
• The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.Julie Thompson — 1997
• Protein sequence alignments: a strategy for the hierarchical analysis of residue conservationCraig D. Livingstone, Geoffrey J. Barton — 1993

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