Gene Re-annotation in Genome of the Extremophile Pyrobaculum Aerophilum by Using Bioinformatics Methods
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Summary
23 new genes, which were missed in the original annotation, are found by combining similarity search and the ab initio gene finding approaches, and 25 originally annotated hypothetical ORFs are recognized as non-coding by the revised annotation.
- Type
- article
- Published
- 2011-10-01
- Cited by
- 6
- References
- 44
- OpenAlex
- https://openalex.org/W2071205060
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:45726074
Keywords
ORFS, Genome, Annotation, Biology, Gene Annotation
References
- High-Throughput Integrated Analyses for the Tyrosinase-Induced Melanogenesis: Microarray, Proteomics and Interactomics Studies
- Novel overlapping coding sequences in Chlamydia trachomatis.
- ZCURVE_V: a new self-training system for recognizing protein-coding genes in viral and phage genomes
- Reannotation of hypothetical ORFs in plant pathogen Erwinia carotovora subsp. atroseptica SCRI1043
- Evolution of Galanin Receptor Genes: Insights from the Deuterostome Genomes
- Composition Profile of the Human Genome at the Chromosome Level
- A genomic perspective on protein families.
- Relationship between Gene Compactness and Base Composition in Rice and Human Genome
- Identify Protein-coding Genes in the Genomes of Aeropyrum pernix K1 and Chlorobium tepidum TLS
- Towards multidimensional genome annotation
- Structural Clones of UAG Decoding RNA
- Improved tools for biological sequence comparison.
- A novel approach to distinguish between intron-containing and intronless genes based on the format of Z curves.
- ZCURVE: a new system for recognizing protein-coding genes in bacterial and archaeal genomes.
- Genome sequence of the hyperthermophilic crenarchaeon Pyrobaculum aerophilum
- AMIGene: Annotation of MIcrobial Genes
- Genome reannotation of Escherichia coli CFT073 with new insights into virulence
- Re-annotation and re-analysis of the Campylobacter jejuni NCTC11168 genome sequence
- MED: a new non-supervised gene prediction algorithm for bacterial and archaeal genomes
- Conserved Short Sequences in Promoter Regions of Human Genome
Cited by
- A next generation of studies: Heterosis and inbreeding depression
- Recognition of Protein-coding Genes Based on Z-curve Algorithms
- Transcriptome profile of a bovine respiratory disease pathogen: Mannheimia haemolytica PHL213
- Four chromosome replication origins in the archaeon Pyrobaculum calidifontis
- Re-Annotation of Protein-Coding Genes in 10 Complete Genomes of Neisseriaceae Family by Combining Similarity-Based and Composition-Based Methods
- Evaluating the annotation of protein-coding genes in bacterial genomes: Chloroflexus aurantiacus strain J-10-fl and Natrinema sp J7-2 as case studies.
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