Targeted journal curation as a method to improve data currency at the Comparative Toxicogenomics Database

Keywords

Data curation, Computer science, Toxicogenomics, Information retrieval, Data science

References

• A MOD(ern) perspective on literature curationJodi Hirschman, Tanya Berardini, Harold Drabkin — 2010
• The Comparative Toxicogenomics Database facilitates identification and understanding of chemical-gene-disease associations: arsenic as a case studyAllan Peter Davis, Cynthia G. Murphy, Michael C. Rosenstein — 2008
• The Toxicity Data Landscape for Environmental ChemicalsRichard Judson, Ann Richard, David J. Dix — 2008
• The Rat Genome Database Curators: Who, What, Where, WhyMary Shimoyama, G. Thomas Hayman, Stanley J. F. Laulederkind — 2009
• Using poison center data for national public health surveillance for chemical and poison exposure and associated illness.Amy Wolkin, Colleen Martin, Royal Law — 2012
• Inside FlyBaseSusan St. Pierre, Peter McQuilton — 2009
• Text mining and manual curation of chemical-gene-disease networks for the Comparative Toxicogenomics Database (CTD)Thomas C. Wiegers, Allan Peter Davis, Kevin Bretonnel Cohen — 2009
• Big data: The future of biocurationDouglas G. Howe, Maria C. Costanzo, Petra Fey — 2008
• Providing the Missing Link: the Exposure Science Ontology ExOCarolyn Mattingly, Thomas E. McKone, Michael A. Callahan — 2012
• Text mining for the biocuration workflowLynette Hirschman, Gully Burns, Martin Krallinger — 2012
• New mutant phenotype data curation system in the Saccharomyces Genome DatabaseMaria C. Costanzo, Marek S. Skrzypek, Robert S Nash — 2009
• Integrating text mining into the MGI biocuration workflowKaren Dowell, Monica McAndrews-Hill, David P. Hill — 2009
• Automatic categorization of diverse experimental information in the bioscience literatureRuihua Fang, Gary Schindelman, Kimberly Van Auken — 2012
• Directly e-mailing authors of newly published papers encourages community curationStephanie Bunt, Gary Grumbling, Helen I. Field — 2012
• The Comparative Toxicogenomics Database: update 2013Allan Peter Davis, Cynthia G. Murphy, Robin J. Johnson — 2012
• Comparative Toxicogenomics Database: a knowledgebase and discovery tool for chemical–gene–disease networksAllan Peter Davis, Christian Murphy, Cynthia Saraceni-Richards — 2008
• The curation paradigm and application tool used for manual curation of the scientific literature at the Comparative Toxicogenomics DatabaseAllan Peter Davis, Thomas C. Wiegers, Christian Murphy — 2011
• Environmental Health Research in the Post-Genome Era: New Fields, New Challenges, and New OpportunitiesJacquelyn J. Bower, Xianglin Shi — 2005
• Genetic and environmental pathways to complex diseasesJulia M. Gohlke, Reuben Thomas, Yonqing Zhang — 2009
• The comparative toxicogenomics database: a cross-species resource for building chemical-gene interaction networks.Carolyn Mattingly, Michael C. Rosenstein, Allan Peter Davis — 2006

Cited by

• The Comparative Toxicogenomics Database's 10th year anniversary: update 2015Allan Peter Davis, Cynthia Grondin, Kelley Lennon-Hopkins — 2014
• Text Mining Effectively Scores and Ranks the Literature for Improving Chemical-Gene-Disease Curation at the Comparative Toxicogenomics DatabaseAllan Peter Davis, Thomas C. Wiegers, Robin J. Johnson — 2013
• A CTD–Pfizer collaboration: manual curation of 88 000 scientific articles text mined for drug–disease and drug–phenotype interactionsAllan Peter Davis, Thomas C. Wiegers, Patricia Roberts‐Miller — 2013
• Chemical-Induced Phenotypes at CTD Help Inform the Predisease State and Construct Adverse Outcome PathwaysAllan Peter Davis, Thomas C. Wiegers, Jolene Wiegers — 2018
• The Comparative Toxicogenomics Database: update 2019Allan Peter Davis, Cynthia Grondin, Robin J. Johnson — 2018
• Leveraging the Comparative Toxicogenomics Database to fill in knowledge gaps for environmental health: a test case for air pollution-induced cardiovascular disease.Allan Peter Davis, Thomas C. Wiegers, Cynthia Grondin — 2020
• Comparative Toxicogenomics Database (CTD): update 2021Allan Peter Davis, Cynthia Grondin, Robin J. Johnson — 2020
• Dealing with different conceptions of pollution in the Gene Regulation Knowledge Commons.Anamika Chatterjee, Tsjalling Swierstra, Martin Kuiper — 2021
• Comparative Toxicogenomics Database (CTD): update 2023Allan Peter Davis, Thomas C. Wiegers, Robin J. Johnson — 2022
• Knowledge-graph-enabled biomedical entity linking: a surveyJiyun Shi, Zhimeng Yuan, Wenxuan Guo — 2023
• Integrating AI-powered text mining from PubTator into the manual curation workflow at the Comparative Toxicogenomics DatabaseThomas C. Wiegers, Allan Peter Davis, Jolene Wiegers — 2025
• Starting points for finding toxicology resourcesStephanie D Holmgren, Stacey Mantooth, E. Weston — 2020

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