Three‐dimensional, sequence order‐independent structural comparison of a serine protease against the crystallographic database reveals active site similarities: Potential implications to evolution and to protein folding

Keywords

Subtilisin, Serine, Pairwise comparison, Proteases, Trypsin

References

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Cited by

• Detection of protein three-dimensional side-chain patterns: new examples of convergent evolution.Marie-Thèrèse Grosse — 1998
• Comparing Graph Representations of Protein Structure for Mining Family-Specific Residue-Based Packing MotifsJ. Donald Johnson, R.L. Jolley — 2005
• Mining Spatial Motifs from Protein Structure GraphsJun Huan, Wei Wang, Deepak Bandyopadhyay — 2003
• Delineating Structural Characteristics of Viral Capsid Proteins Critical for Their Functional Assembly.Shanshan Cheng — 2014
• Predicting protein-ligand and protein-peptide interfacesPaola Bertolazzi, Concettina Guerra, Giampaolo Liuzzi — 2014
• Computational approaches for identifying inhibitors of protein interactionsWissam Mehio — 2011
• Revealing divergent evolution, identifying circular permutations and detecting active-sites by protein structure comparisonLuonan Chen, Ling‐Yun Wu, Yong Wang — 2006
• Overview of Protein Structural and Functional FoldsPeter D. Sun, Christine E. Foster, Jeffrey C. Boyington — 2004
• Computational methods for the structural alignment of moleculesChristian Lemmen, Thomas Lengauer — 2000
• Structural genomics and its importance for gene function analysisJeffrey Skolnick, Jacquelyn S. Fetrow, Andrzej Koliński — 2000
• A hybrid clustering of protein binding sitesGábor Iván, Zoltán Szabadka, Vince Grolmusz — 2010
• Computergestützte Strukturbestimmung biochemischer Komplexe durch einen Fuzzy Logic-basierten AlgorithmusThomas E. Exner — 2000
• Efficient and scalable geometric hashing method for searching protein 3D structuresGook-Pil Roh, Seung-won Hwang, Byoung-Kee Yi — 2011
• Protein-protein interfaces: architectures and interactions in protein-protein interfaces and in protein cores. Their similarities and differences.Chung‐Jung Tsai, Shuo Liang Lin, Haim J. Wolfson — 1996
• Similarity recognition of molecular structures by optimal atomic matching and rotational superpositionBenjamin Helmich‐Paris, Marek Sierka — 2012
• Structure Comparison and Structure PatternsIngvar Eidhammer, Inge Jonassen, William R. Taylor — 2000
• Using a library of structural templates to recognise catalytic sites and explore their evolution in homologous families.James Torrance, Gail J. Bartlett, Craig T. Porter — 2005
• Conformational Studies Using Molecular Mechanics on Model Peptides with 1-Aminocycloalkane 1-Carboxylic Acid ResiduesShashidhar N. Rao, Ming Fai Chan, Vitukudi N. Balaji — 1997
• Accurate Classification of Protein Structural Families Using Coherent Subgraph AnalysisJun Huan, Wei Wang, Amber R. Washington — 2003
• Trypsin Gene Expression by Quantitative In Situ Hybridization in Carnivorous and Herbivorous Prickleback Fishes (Teleostei: Stichaeidae): Ontogenetic, Dietary, and Phylogenetic EffectsAnna K. Gawlicka, Michael H. Horn — 2005

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