A Degenerate Primer MOB Typing (DPMT) Method to Classify Gamma-Proteobacterial Plasmids in Clinical and Environmental Settings
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Summary
The relaxase screening method, which is called “Degenerate Primer MOB Typing” or DPMT, detected not only most known Inc/Rep groups, but also a plethora of plasmids not previously assigned to any Inc group or Rep-type.
- Type
- article
- Published
- 2012-07-11
- Cited by
- 89
- References
- 84
- Access
- Open access
- OpenAlex
- https://openalex.org/W2046743420
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:14876613
Keywords
Plasmid, Biology, Genetics, Primer (cosmetics), Typing
References
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- Pathogenomics of the Virulence Plasmids of Escherichia coli
- Characteristics of Escherichia coli causing persistence or relapse of urinary tract infections: Phylogenetic groups, virulence factors and biofilm formation
- Propeties of plasmids produced by recombination between R factors of groups J and FII
- Plasmid replicon typing.
- GOR method for predicting protein secondary structure from amino acid sequence.
- Comparative analysis of the replication regions of IncB, IncK, and IncZ plasmids
- Analysis of the incompatibility determinants of I-complex plasmids
- Identification of bacterial plasmids based on mobility and plasmid population biology.
- Combinatorial events of insertion sequences and ICE in Gram-negative bacteria.
- Identification and classification of bacterial plasmids.
- Expansion of the IncX plasmid family for improved identification and typing of novel plasmids in drug-resistant Enterobacteriaceae.
- Analysis of IncF plasmids evolution: nucleotide sequence of an IncFIII replication region.
- Replication functions of new broad host range plasmids isolated from polluted soils.
- Further characterization of R485, and IncX plasmid that determines two kinds of pilus.
- Complete Sequencing of the bla NDM-1-Positive IncA/C Plasmid from Escherichia coli ST38 Isolate Suggests a Possible Origin from Plant Pathogens
- Erythromycin Resistance-Conferring Plasmid pRSB105, Isolated from a Sewage Treatment Plant, Harbors a New Macrolide Resistance Determinant, an Integron-Containing Tn402-Like Element, and a Large Region of Unknown Function
- Physical and functional map of the hemolytic plasmid pSU316.
- DNA segments of the IncX plasmid R485 determining replication and incompatibility with plasmid R6K.
- Genetic recombination and complementation between bacteriophage T7 and cloned fragments of T7 DNA.
Cited by
- Plasmid detection, characterization and ecology
- Plasmid Diversity and Adaptation Analyzed by Massive Sequencing of Escherichia coli Plasmids
- Detection and characterization of antibiotic resistance plasmids in Cheney biosolids
- Could Aeromonas spp. be considered a vector of resistance genes from the environment to human intestinal flora
- Small-Plasmid-Mediated Antibiotic Resistance Is Enhanced by Increases in Plasmid Copy Number and Bacterial Fitness
- Genomics of microbial plasmids: classification and identification based on replication and transfer systems and host taxonomy
- Plasmid Flux in Escherichia coli ST131 Sublineages, Analyzed by Plasmid Constellation Network (PLACNET), a New Method for Plasmid Reconstruction from Whole Genome Sequences
- The Complete Nucleotide Sequence of the Carbapenem Resistance-Conferring Conjugative Plasmid pLD209 from a Pseudomonas putida Clinical Strain Reveals a Chimeric Design Formed by Modules Derived from Both Environmental and Clinical Bacteria
- Positive selection and compensatory adaptation interact to stabilize non-transmissible plasmids
- Plasmids and the spread of resistance.
- Degenerate primer MOB typing of multiresistant clinical isolates of E. coli uncovers new plasmid backbones.
- Ordering the bestiary of genetic elements transmissible by conjugation
- Complete Nucleotide Sequence of Two Multidrug-Resistant IncR Plasmids from Klebsiella pneumoniae
- IncP-1 and PromA Group Plasmids Are Major Providers of Horizontal Gene Transfer Capacities Across Bacteria in the Mycosphere of Different Soil Fungi
- Targeting relaxase genes for classification of the predominant plasmids in Enterobacteriaceae.
- Mobilizable Rolling-Circle Replicating Plasmids from Gram-Positive Bacteria: A Low-Cost Conjugative Transfer
- Origin-of-transfer sequences facilitate mobilisation of non-conjugative antimicrobial-resistance plasmids in Staphylococcus aureus
- An Improved Method for Including Upper Size Range Plasmids in Metamobilomes
- First Report of a Clinical, Multidrug-Resistant Enterobacteriaceae Isolate Coharboring Fosfomycin Resistance Gene fosA3 and Carbapenemase Gene blaKPC-2 on the Same Transposon, Tn1721
- In Silico Detection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing
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