Comparative Analyses of Hairpin Substrate Recognition by Escherichia coli and Bacillus subtilis Ribonuclease P Ribozymes

Keywords

Ribozyme, Bacillus subtilis, RNase P, Escherichia coli, Ribonuclease

References

• Compilation of tRNA sequences and sequences of tRNA genesSuely Mara Vaz Guimarães de Araújo — 2004
• Guide DNA technique reveals that the protein component of bacterial ribonuclease P is a modifier for substrate recognitionJens Hanke, Peer Bork, J. Reich — 2001
• Evolutionary perspective on the structure and function of ribonuclease P, a ribozymeNorman R. Pace, James W. Brown — 1995
• 11 Structure and Mechanism of the Large Catalytic RNAs: Group I and Group II Introns and Ribonuclease PThomas R. Cech — 1993
• In vitro hyperprocessing of Drosophila tRNAs by the catalytic RNA of RNase P the cloverleaf structure of tRNA is not always stable?Yoshiaki Hori, Hideo Baba, Ryu Ueda — 2000
• Recent studies of RNase P : tRNA Structure, Biosynthesis and FunctionSidney Altman, Leif A. Kirsebom — 1995
• Hyperprocessing of tRNA by the catalytic RNA of RNase P. Cleavage of a natural tRNA within the mature tRNA sequence and evidence for an altered conformation of the substrate tRNA.Yo Kikuchi, Noriko Sasaki — 1992
• Ribonuclease P: function and variation.Norman R. Pace, Danielle Smith — 1990
• Mg2+-dependent folding of a large ribozyme without kinetic trapsTao Pan, Tobin R. Sosnick, Xingwang Fang — 1999
• Nucleotide sequence and secondary structure of citrus exocortis and chrysanthemum stunt viroid.Hans Groß, Guido Krupp, Horst Domdey — 1982
• Kinetics of Hyperprocessing Reaction of Human Tyrosine tRNA by Ribonuclease P Ribozyme from Escherichia coliTomoaki Ando, Terumichi Tanaka, Yoshiaki Hori — 2002
• Another cut for lysine tRNA: application of the hyperprocessing reaction reveals another stabilization strategy in metazoan lysine tRNAs.Tatsuki Tanaka, Jumpei Kondo, Yoshiki Hori — 2002
• Human Tyrosine tRNA Is Also Internally Cleavable by E. coli Ribonuclease P RNA Ribozyme in VitroTomoaki Ando, Terumichi Tanaka, Yoshiaki Hori — 2001
• Hyperprocessing reaction of tRNA by Bacillus subtilis ribonuclease P ribozymeYoshiaki Hori, Etsuko Sakai, Terumichi Tanaka — 2001
• RNase P RNAs from some Archaea are catalytically active.James A. Pannucci, Elizabeth S. Haas, Thomas A. Hall — 1999
• Substrate shape specificity of E coli RNase P ribozyme is dependent on the concentration of magnesium ion.Tomoaki Ando — 2003
• The varieties of ribonuclease P.S C Darr, James W. Brown, Norman R. Pace — 1992
• Escherichia coli tRNAs Are Resistant to the Hyperprocessing Reaction of Homologous E. coli Ribonuclease P RibozymeTerumichi Tanaka, Tomoaki Ando, Etsuko Sakai — 2003
• Guide DNA technique in bacterial ribonuclease P reaction for effective processing of tRNA precursorTerumichi Tanaka, Yoshiaki Hori, Yo Kikuchi — 2002
• Recent Studies of RNase PS. Altman, S. Talbot, L. Kirsebom — 1995

Cited by

• The Natural Intron Sequence of Human Tyrosine Pre-transfer RNA Is Not a Temporal Stabilizer for Cloverleaf StructureСоколова Алла Николаевна — 2004
• The Protein Component of Bacterial Ribonuclease P Flickers the Metal Ion Response to the Substrate Shape Preference of the RibozymeTomoaki Ando, Terumichi Tanaka, Yo Kikuchi — 2003
• Examining the Bases of the J3⁄4 Domain of Escherichia coli Ribonuclease PTerumichi Tanaka, Tomoaki Ando, Shinnosuke HAGA — 2004
• Substrate Shape Preference of Escherichia coli Ribonuclease P Ribozyme and Holo Enzyme Using Bottom-Half Part-Shifting Variants of Pre-tRNATerumichi Tanaka, Yasuhiro Nagai, Yo Kikuchi — 2005
• The P3 domain of E. coli ribonuclease P RNA can be truncated and replacedTerumichi Tanaka, Naomi Kanda, Yo Kikuchi — 2004

Related papers

• A new type of hairpin ribozyme consisting of three domains.Yasuo Komatsu, Ikuyo Kanzaki, Miho Shirai — 1997
• A hammerhead ribozyme allows synthesis of a new form of the Tetrahymena ribozyme homogeneous in length with a 3' end blocked for transesterification.Cheryl A. Grosshans, Thomas R. Cech — 1991
• Construction of hairpin ribozymes with a three-way junction.Yasuo Komatsu, Miho Shirai, Shigeko Yamashita — 1997
• Different target‐site specificities of the hairpin ribozyme in cis and trans cleavagesKazuko Fujitani, Noriko Sasaki-Tozawa, Yo Kikuchi — 1993
• Extensive phosphorothioate substitution yields highly active and nuclease-resistant hairpin ribozymes.Bharat M. Chowrira, John M. Burke — 1992
• Antigenomic delta ribozyme variants with mutations in the catalytic core obtained by the in vitro selection methodMichał Łęgiewicz — 2006
• Preparation of Self-cleavable Hammerhead Ribozyme with 10 Copies Targeting the Simian Immunodeficiency Virus 3′ LTR Region and Kinetic Analysis of Its Catalytic Activity in VitroDeng Wen — 2000
• The many faces of the hairpin ribozyme: Structural and functional variants of a small catalytic rnaSabine Müller, Bettina Appel, Tobias Krellenberg — 2012
• Design of hairpin ribozyme variants with improved activity for poorly processed substratesIrene Drude, Anne Strahl, Daniel Galla — 2011