progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement
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Summary
A new method to align two or more genomes that have undergone rearrangements due to recombination and substantial amounts of segmental gain and loss is described, demonstrating high accuracy in situations where genomes have undergone biologically feasible amounts of genome rearrangement, segmental loss and loss.
- Type
- article
- Published
- 2010-06-25
- Cited by
- 3,782
- References
- 75
- Access
- Open access
- OpenAlex
- https://openalex.org/W2041257508
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:47179
Keywords
Genome, Biology, Indel, Breakpoint, Gene duplication
References
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- On the Repeat-Annotated Phylogenetic Tree Reconstruction Problem
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- OrthoMCL: identification of ortholog groups for eukaryotic genomes.
- Fast Statistical Alignment
- Finding Anchors for Genomic Sequence Comparison
- MAVID multiple alignment server
- A local alignment tool for very long DNA sequences
- Genome sequence of enterohaemorrhagic Escherichia coli O157:H7
- Ohno's dilemma: Evolution of new genes under continuous selection
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- Co-phylog: an assembly-free phylogenomic approach for closely related organisms
- Complete Genome Sequence of Paenibacillus strain Y4.12MC10, a Novel Paenibacillus lautus strain Isolated from Obsidian Hot Spring in Yellowstone National Park
- Draft Genome Sequences of Two Pairs of Human Intestinal Bifidobacterium longum subsp. longum Strains, 44B and 1-6B and 35B and 2-2B, Consecutively Isolated from Two Children after a 5-Year Time Period
- Genomic analysis of the biocontrol strain Pseudomonas fluorescens Pf29Arp with evidence of T3SS and T6SS gene expression on plant roots.
- Proteomic and Transcriptomic Analyses of “Candidatus Pelagibacter ubique” Describe the First PII-Independent Response to Nitrogen Limitation in a Free-Living Alphaproteobacterium
- Physiology and evolution of nitrate acquisition in Prochlorococcus
- Genomic analysis of three African strains of Bacillus anthracis demonstrates that they are part of the clonal expansion of an exclusively pathogenic bacterium
- Plasmid-Mediated Antibiotic Resistance and Virulence in Gram-negatives: the Klebsiella pneumoniae Paradigm
- De Novo Sequences of Haloquadratum walsbyi from Lake Tyrrell, Australia, Reveal a Variable Genomic Landscape
- Complete Genome Sequence of Francisella guangzhouensis Strain 08HL01032T, Isolated from Air-Conditioning Systems in China
- Complete Genome Sequence of Borrelia afzelii K78 and Comparative Genome Analysis
- Genomic Comparison of the Closely-Related Salmonella enterica Serovars Enteritidis, Dublin and Gallinarum
- Using quantitative PCR with retrotransposon-based insertion polymorphisms as markers in sugarcane
- Comparative genomic analysis of duplicated homoeologous regions involved in the resistance of Brassica napus to stem canker
- Comparative Genomic Insights into Ecophysiology of Neutrophilic, Microaerophilic Iron Oxidizing Bacteria
- Association of a Chromosomal Rearrangement Event with Mouse Posterior Polymorphous Corneal Dystrophy and Alterations in Csrp2bp, Dzank1, and Ovol2 Gene Expression
- Recurrent selection explains parallel evolution of genomic regions of high relative but low absolute differentiation in a ring species
- Complete genome sequence of Bacillus amyloliquefaciens subsp. plantarum S499, a rhizobacterium that triggers plant defences and inhibits fungal phytopathogens.
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