Pedigree Reconstruction Using Identity by Descent

Keywords

Pedigree chart, Outbreeding depression, Identity by descent, Inbreeding, Text generation

References

• Whole population, genome-wide mapping of hidden relatedness.Ida Lundin — 2009
• Algorithms for Comparing Pedigree GraphsBonnie Kirkpatrick, Yakir Reshef, Hilary K. Finucane — 2010
• Pedigree analysis in human genetics.Robert C. Elston — 1987
• Speeding up HMM algorithms for genetic linkage analysis via chain reductions of the state spaceDan Geiger, C. E. Meek, Ydo Wexler — 2009
• Descent graphs in pedigree analysis: applications to haplotyping, location scores, and marker-sharing statistics.Eric M. Sobel, Kenneth Lange — 1996
• I and iKevin Barraclough — 2001
• Identifying nineteenth century genealogical links from genotypesJim Stankovich, Melanie Bahlo, Justin P. Rubio — 2005
• Haplotypes versus genotypes on pedigreesBonnie Kirkpatrick — 2010
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• Construction of multilocus genetic linkage maps in humans.E S Lander, P Green — 1987
• Reconstructing sibling relationships in wild populationsTanya Berger‐Wolf, Saad I. Sheikh, Bhaskar DasGupta — 2007
• Reconstructing pedigrees: a stochastic perspective.Bhalchandra D. Thatte, Mike Steel — 2007
• The probability that related individuals share some section of genome identical by descent.Kevin P. Donnelly — 1983
• Exome sequencing identifies the cause of a Mendelian disorderSarah Ng, Kati J. Buckingham, Choli Lee — 2009
• Statistical tests for detection of misspecified relationships by use of genome-screen data.Mary Sara McPeek, Lei Sun — 2000
• CFTR mutations and reproductive outcomes in a population isolateIrene Gallego Romero, Carole Ober — 2007
• Inference of unexpected genetic relatedness among individuals in HapMap Phase III.Trevor J. Pemberton, Chaolong Wang, Jun Z. Li — 2010
• Enhanced Pedigree Error DetectionLei Sun, Kenneth Wilder, Mary Sara McPeek — 2002
• High-Resolution Mapping of Crossovers Reveals Extensive Variation in Fine-Scale Recombination Patterns Among HumansGraham Coop, Xiaoquan Wen, Carole Ober — 2008
• Distribution of genome shared IBD by half-sibs: approximation by the Poisson clumping heuristic.Heike Bickeböller, E. A. Thompson — 1996

Cited by

• Algorithms for Comparing Pedigree GraphsBonnie Kirkpatrick, Yakir Reshef, Hilary K. Finucane — 2010
• Conservation Genomics of the Endangered Mexican Wolf and De Novo SNP Marker Development in Pumas using Next-Generation SequencingRobert R. Fitak — 2014
• Isomorphism and similarity for 2-generation pedigreesHaitao Jiang, Guohui Lin, Weitian Tong — 2015
• The minimum evolution problem is hard: a link between tree inference and graph clustering problemsSarah Bastkowski, Vincent Moulton, Andreas Spillner — 2016
• PRIMUS: rapid reconstruction of pedigrees from genome-wide estimates of identity by descent.Jeffrey Staples, Dandi Qiao, Michael H. Cho — 2014
• IPEDX: An exact algorithm for pedigree reconstruction using genotype dataDan He, Eleazar Eskin — 2013
• Historical Pedigree Reconstruction from Extant Populations Using PArtitioning of RElatives (PREPARE)Doron Shem‐Tov, Eran Halperin — 2014
• Comparing Pedigree GraphsBonnie Kirkpatrick, Yakir Reshef, Hilary K. Finucane — 2010
• IPED2: inheritance path based pedigree reconstruction algorithm for complicated pedigreesDan He, Zhanyong Wang, Laxmi Parida — 2014
• Development and testing of a genetic marker‐based pedigree reconstruction system ‘PR‐genie’ incorporating size‐class dataRobert C. Cope, Janet M. Lanyon, Jennifer M. Seddon — 2014
• IPED: Inheritance Path-based Pedigree Reconstruction Algorithm Using Genotype DataDan He, Zhanyong Wang, Buhm Han — 2013
• Deciphering the fine-structure of tribal admixture in the Bedouin population using genomic dataBarak Markus, I. Alshafee, Ohad S. Birk — 2013
• Unexpected Relationships and Inbreeding in HapMap Phase III PopulationsEric Stevens, Joseph D. Baugher, Matthew D. Shirley — 2012
• The Variance of Identity-by-Descent Sharing in the Wright–Fisher ModelShai Carmi, Pier Francesco Palamara, Vladimir Vacic — 2012
• Inference of historical migration rates via haplotype sharingPier Francesco Palamara, Itsik Pe’er — 2013
• Algorithms for Human GeneticsRichard M. Karp, Bonnie Kirkpatrick — 2011
• IPED2X: A robust pedigree reconstruction algorithm for complicated pedigreesDan He, Eleazar Eskin — 2014
• Conservation genomics of threatened animal species.Cynthia Steiner, Andrea S. Putnam, Paquita E. A. Hoeck — 2013
• Discovering genes involved in disease and the mystery of missing heritabilityEleazar Eskin — 2015
• Confirmation and discovery of maternal grandsires and great-grandsires in dairy cattle.P.M. VanRaden, T.A. Cooper, G.R. Wiggans — 2013

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