CDD: a Conserved Domain Database for the functional annotation of proteins

Keywords

Annotation, Domain (mathematical analysis), Protein domain, Biology, Sequence alignment

References

• CD-Search: protein domain annotations on the flyAron Marchler‐Bauer, Stephen H. Bryant — 2004
• Protein subfamily assignment using the Conserved Domain DatabaseJessica H. Fong, Aron Marchler‐Bauer — 2008
• CDD: specific functional annotation with the Conserved Domain DatabaseAron Marchler‐Bauer, James B. Anderson, Farideh Chitsaz — 2008
• Database resources of the National Center for Biotechnology Information: updateDavid Wheeler — 2004
• TIGRFAMs and Genome Properties: tools for the assignment of molecular function and biological process in prokaryotic genomesJeremy Selengut, Daniel H. Haft, Tonje Davidsen — 2006
• SMART 5: domains in the context of genomes and networksIvica Letunić — 2005
• The Pfam protein families databaseAlex Bateman — 2011
• CDD: a database of conserved domain alignments with links to domain three-dimensional structureAron Marchler‐Bauer — 2002
• The COG database: an updated version includes eukaryotesRoman L. Tatusov, Natalie D. Fedorova, John D. Jackson — 2003
• Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.Stephen F. Altschul — 1997
• The Pfam protein families databaseROBERT FINN, Jaina Mistry, John Tate — 2007
• Nucleic Acids ResearchG. Blackburn, G. Taylor, G. Thatcher — 2010

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• Complete genomic sequence of a reovirus isolated from grass carp in China.Susan Forward, Joan Torres — 2012
• A Machine Learning Approach To Identify Hydrogenosomal Proteins in Trichomonas vaginalisRustin M. Levy, William V. Giannobile, Murilo Fernando Neuppmann Feres — 2011
• A Novel Malate Dehydrogenase from Ceratonia siliqua L. Seeds with Potential Biotechnological ApplicationsSara Salahi — 2012
• The Atypical Short-Chain Dehydrogenases HCF173 and HCF244 Are Jointly Involved in Translational Initiation of the psbA mRNA of Arabidopsis1[W]希 細川 — 2012
• Regulation of Phosphatidylethanolamine Homeostasis—The Critical Role of CTP:Phosphoethanolamine Cytidylyltransferase (Pcyt2)Olivier Jouslin — 2013
• Chaperone-Usher Fimbriae of Escherichia coliJ. Aupetit — 2013
• Characterization of a Novel Rieske-Type Alkane Monooxygenase System in Pusillimonas sp. Strain T7-7R.J. Sutherland, Agnes Ford, S. V. Jackson — 2013
• Molecular characterization of interferon regulatory factor 2 (IRF-2) homolog in pearl oyster Pinctada fucata.Alexandre Castant — 2013
• Proteolytic processing of the Yersinia pestis YapG autotransporter by the omptin protease Pla and the contribution of YapG to murine plague pathogenesis.Uğur Turhal, Alparslan Duysak, M. Bilginer Gülmezoğlu — 2013
• Characterization of an M28 metalloprotease family member residing in the yeast vacuoleJ. R. Srour, O. L. Curtis, S. Othmer — 2013
• Sequence determination and analysis of three plasmids of Pseudomonas sp. GLE121, a psychrophile isolated from surface ice of Ecology Glacier (Antarctica).Juan Antonio Morán Cabré — 2013
• Role for Ferredoxin:NAD(P)H Oxidoreductase (FprA) in Sulfate Assimilation and Siderophore Biosynthesis in PseudomonadsSherrill Lingel, Carl Rhodes, Amado Cordova — 2013
• LIFEGUARD proteins support plant colonization by biotrophic powdery mildew fungi昇 椿原, 礼二 山下, 一秀 鹿又 — 2013
• Type IV Pilus Proteins Form an Integrated Structure Extending from the Cytoplasm to the Outer MembraneChristopher A. Janicak — 2013
• A mutation in the serine protease TMPRSS4 in a novel pediatric neurodegenerative disorderPiya Lahiry, Lemuel Racacho, Jian Wang — 2013
• Bacteriophage T5 encodes a homolog of the eukaryotic transcription coactivator PC4 implicated in recombination-dependent DNA replication.Teguh Pudjo Muljono — 2013
• In silico comparison of genomic regions containing genes coding for enzymes and transcription factors for the phenylpropanoid pathway in Phaseolus vulgaris L. and Glycine max L. Merr清 岡野 — 2013

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