Annotation Issues in Pharmacological Texts

Keywords

Annotation, Computer science, Documentation, Natural language processing, Consistency (knowledge bases)

References

• Towards User-Adaptive Annotation GuidelinesStefanie Dipper, Michael Gøtze, Stavros Skopeteas — 2004
• The CLEF Corpus: Semantic Annotation of Clinical TextAngus Roberts, Robert Gaizauskas, Mark Hepple — 2007
• Natural Language Annotation for Machine LearningJames Pustejovsky, Amber Stubbs — 2012
• Normalized names for clinical drugs: RxNorm at 6 yearsStuart J. Nelson, Kelly Zeng, John Kilbourne — 2011
• Corpus Design for Biomedical Natural Language ProcessingKevin Bretonnel Cohen, Philip V. Ogren, Lynne M. Fox — 2005
• Role of Alveolar β2-Adrenergic Receptors on Lung Fluid Clearance and Exercise Ventilation in Healthy HumansStefania Paolillo, Riccardo Pellegrino, Elisabetta Salvioni — 2013
• Assessment of commercial NLP engines for medication information extraction from dictated clinical notesV. Jagannathan, Charles J. Mullett, James G. Arbogast — 2009
• Corpus Annotation SchemesGeoffrey Leech — 1993
• Book Review: Natural Language Processing with Python by Steven Bird, Ewan Klein, and Edward LoperMichael Elhadad — 2009
• GENETAG: a tagged corpus for gene/protein named entity recognitionLorraine Tanabe, Natalie Xie, Lynne H Thom — 2005
• Protein names and how to find themKristofer Franzén, Gunnar Eriksson, Fredrik Olsson — 2002
• Text mining and its potential applications in systems biology.Sophia Ananiadou, Douglas B. Kell, Jun'ichi Tsujii — 2006
• Recognising Nested Named Entities in Biomedical TextBeatrice Alex, Barry Haddow, Claire Grover — 2007
• Integrated Annotation for Biomedical Information ExtractionSeth Kulick, Ann Bies, Mark Liberman — 2004
• SemEval-2013 Task 9 : Extraction of Drug-Drug Interactions from Biomedical Texts (DDIExtraction 2013)Isabel Segura-Bédmar, Paloma Martı́nez, Mar'ia Herrero Zazo — 2013
• Identification of new drug classification terms in textual resourcesCorinna Kolářik, Martin Hofmann‐Apitius, Marc Zimmermann — 2007
• Building a semantically annotated corpus of clinical textsAngus Roberts, Robert Gaizauskas, Mark Hepple — 2009
• GENIA corpus - a semantically annotated corpus for bio-textminingJD Kim, Tomoko Ohta, Yuka Tateisi — 2003
• DrugBank: a comprehensive resource for in silico drug discovery and explorationDavid S. Wishart — 2005
• Natural-Language ProcessingMichael A. Covington — 1982

Cited by

• Application of Domain Ontologies to Natural Language Processing: A Case Study for Drug-Drug InteractionsMaría Herrero-Zazo, Isabel Segura-Bédmar, Janna Hastings — 2015
• Cadec: A corpus of adverse drug event annotationsSarvnaz Karimi, Alejandro Metke‐Jimenez, Madonna Kemp — 2015
• The DDI corpus: An annotated corpus with pharmacological substances and drug-drug interactionsMaría Herrero-Zazo, Isabel Segura-Bédmar, Paloma Martı́nez — 2013
• Keeping up with the digital age: New data sources in research on languages for specific purposesAmanda Roig Marín — 2017
• Extracting Kinship from Obituary to Enhance Electronic Health Records for Genetic ResearchKai He, Jialun Wu, Xiaoyong Ma — 2019
• Comparison of Wrapper Based Feature Selection and Classifier Selection Methods for Drug Named Entity RecognitionSaman Sharifian Razavi — 2015

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