Normalization of cDNA microarray data.
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Summary
Print-tip loess normalization provides a well-tested general purpose normalization method which has given good results on a wide range of arrays and may be refined by using quality weights for individual spots.
- Type
- article
- Published
- 2003-12-01
- Cited by
- 2,196
- References
- 15
- Access
- Open access
- OpenAlex
- https://openalex.org/W2013444425
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:13316974
Keywords
Normalization (sociology), Computer science, Database normalization, Artificial intelligence, Pattern recognition (psychology)
References
- Statistical Models in S
- Normalization for cDNA microarry data
- Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation.
- Replicated microarray data
- Microarray expression profiling identifies genes with altered expression in HDL-deficient mice.
- STATISTICAL METHODS FOR IDENTIFYING DIFFERENTIALLY EXPRESSED GENES IN REPLICATED cDNA MICROARRAY EXPERIMENTS
- Ratio-based decisions and the quantitative analysis of cDNA microarray images.
- Bioconductor R Packages for Exploratory Analysis and Normalization of cDNA Microarray Data
- AND T
Cited by
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- Analysis of array CGH data: from signal ratio to gain and loss of DNA regions
- Identification of promoters bound by c-Jun/ATF2 during rapid large-scale gene activation following genotoxic stress.
- Transcriptional profiling of tissue plasticity: role of shifts in gene expression and technical limitations.
- High-resolution copy number analysis of paraffin-embedded archival tissue using SNP BeadArrays.
- Normalization of two-channel microarrays accounting for experimental design and intensity-dependent relationships
- A microarray approach for comparative expression profiling of the discrete maturation zones of mouse growth plate cartilage.
- The Mediator Subunit MDT-15 Confers Metabolic Adaptation to Ingested Material
- Assessment of gene expression in many samples using vertical arrays
- Gene expression profiling in glioblastoma and immunohistochemical evaluation of IGFBP-2 and CDC20
- The Global Regulator CodY Regulates Toxin Gene Expression in Bacillus anthracis and Is Required for Full Virulence
- Time-Resolved Transcriptome Analysis of Bacillus subtilis Responding to Valine, Glutamate, and Glutamine
- Stone formation in peach fruit exhibits spatial coordination of the lignin and flavonoid pathways and similarity to Arabidopsis dehiscence
- Proteogenomic studies in epithelial ovarian cancer: established knowledge and future needs.
- Central Role of Manganese in Regulation of Stress Responses, Physiology, and Metabolism in Streptococcus pneumoniae
- Microarray analysis of a microbe–mineral interaction
- Nucleoid‐associated PhaF phasin drives intracellular location and segregation of polyhydroxyalkanoate granules in Pseudomonas putida KT2442
- The Hydrogenase Chip: a tiling oligonucleotide DNA microarray technique for characterizing hydrogen-producing and -consuming microbes in microbial communities
- Structural and inflammatory heterogeneity in subcutaneous adipose tissue: relation with liver histopathology in morbid obesity.
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