Exploring Two Biomedical Text Genres for Disease Recognition
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Summary
This paper reports on the automatic detection of disease concepts in two genres of biomedical text: sentences from the literature and PubMed user queries, using a statistical model and a Natural Language Processing algorithm for disease recognition.
- Type
- article
- Published
- 2009-06-04
- Cited by
- 28
- References
- 31
- Access
- Open access
- OpenAlex
- https://openalex.org/W2012688074
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:4394376
Keywords
Computer science, Natural language processing, Artificial intelligence, Sentence, Domain (mathematical analysis)
References
- Pattern Classification
- SemCat: Semantically Categorized Entities for Genomics
- The Stratified Model of Information Retrieval Interaction: Extension and Applications
- QueryCat: automatic categorization of MEDLINE queries
- Effective mapping of biomedical text to the UMLS Metathesaurus: the MetaMap program
- Risk of complications of pregnancy in women with type 1 diabetes: nationwide prospective study in the Netherlands
- A Priority Model for Named Entities
- Assessment of disease named entity recognition on a corpus of annotated sentences
- Natural language processing to extract medical problems from electronic clinical documents: Performance evaluation
- A day in the life of PubMed: analysis of a typical day's query log.
- The interaction of domain knowledge and linguistic structure in natural language processing: interpreting hypernymic propositions in biomedical text
- Understanding user goals in web search
- Context-sensitive information retrieval using implicit feedback
- Aggregating UMLS Semantic Types for Reducing Conceptual Complexity
- Personalizing search via automated analysis of interests and activities
- Adapting information retrieval to query contexts
- Overview of BioCreative II gene normalization
- Survey Article: Inter-Coder Agreement for Computational Linguistics
- Overview of BioCreative II gene mention recognition
- Automated recognition of malignancy mentions in biomedical literature
Cited by
- An Empirical Evaluation of Resources for the Identification of Diseases and Adverse Effects in Biomedical Literature
- Disease Mention Recognition with Specific Features
- How users search and what they search for in the medical domain
- Electronic Health Record diagnosis tool and a cross reference between coding standards
- Improving information retrieval using Medical Subject Headings Concepts: a test case on rare and chronic diseases.
- Linking multiple disease-related resources through UMLS
- Semi-automatic semantic annotation of PubMed Queries: a study on quality, efficiency, satisfaction
- Extracting Rx information from clinical narrative
- BioAnnote: A software platform for annotating biomedical documents with application in medical learning environments
- Unsupervised mapping of sentences to biomedical concepts based on integrated information retrieval model and clustering
- A context-blocks model for identifying clinical relationships in patient records
- Challenges in Clinical Natural Language Processing for Automated Disorder Normalization
- Improving the Effectiveness of Information Extraction from Biomedical Text
- NCBI Disease Corpus: A Resource for Disease Name Recognition and Concept Normalization
- NCBI at 2013 ShARe/CLEF eHealth Shared Task: Disorder Normalization in Clinical Notes with Dnorm
- Automated Disease Normalization with Low Rank Approximations
- Recognition of Patient-Related Named Entities in Noisy Tele-Health Texts
- BioNLP 2010: Year in review
- Advancing Biomedical Named Entity Recognition with Multivariate Feature Selection and Semantically Motivated Features
- Detection and normalization of medical terms using domain-specific term frequency and adaptive ranking
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